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hadhb.S hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379769, updated on 18-Sep-2024

Summary

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Official Symbol
hadhb.S
Official Full Name
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta S homeolog
Primary source
Xenbase:XB-GENE-1009676
Locus tag
XELAEV_18030253mg
See related
EnsemblRapid:ENSXLAG00005005506
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
echb; mtpb; hadhb; mstp029; tp-beta; thiolase
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Genomic context

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See hadhb.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (140596197..140615915)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (133831765..133851497)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene interferon-induced very large GTPase 1 Neighboring gene hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha S homeolog Neighboring gene uncharacterized LOC108706156 Neighboring gene vomeronasal type-2 receptor 26-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53029

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables acetyl-CoA C-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta S homeolog
Names
hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit S homeolog
hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086608.1 → NP_001080077.1  hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta S homeolog

    See identical proteins and their annotated locations for NP_001080077.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045222
    UniProtKB/TrEMBL
    Q7ZTL0
    Related
    ENSXLAP00005016257.1, ENSXLAT00005016548.1
    Conserved Domains (2) summary
    PRK08963
    Location:50 → 466
    fadI; 3-ketoacyl-CoA thiolase; Reviewed
    cd00751
    Location:51 → 466
    thiolase; Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    140596197..140615915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018264238.2 → XP_018119727.1  hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8G607, A0A974CSZ8
    Related
    ENSXLAP00005016263.1, ENSXLAT00005016554.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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