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h3-3b.L H3.3 histone B L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379757, updated on 4-Nov-2024

Summary

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Official Symbol
h3-3b.L
Official Full Name
H3.3 histone B L homeolog
Primary source
Xenbase:XB-GENE-17337112
Locus tag
XELAEV_18044072mg
See related
EnsemblRapid:ENSXLAG00005034462 AllianceGenome:Xenbase:XB-GENE-17337112
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
h3.3b; h3f3b
Summary
Orthologous to human H3-3B (H3.3 histone B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See h3-3b.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (47329361..47334122, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (37009263..37014024, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene integrin subunit beta 4 L homeolog Neighboring gene galactokinase 1 L homeolog Neighboring gene uncharacterized LOC108701120 Neighboring gene unkempt family zinc finger L homeolog Neighboring gene tripartite motif containing 47 L homeolog Neighboring gene unc-13 homolog D L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dynamic regulation of histone modifications in Xenopus oocytes through histone exchange. Stewart MD, et al. Mol Cell Biol, 2006 Sep. PMID 16943430, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53509

General protein information

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Preferred Names
H3.3 histone B L homeolog
Names
H3 histone, family 3B (H3.3B)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086596.1 → NP_001080065.1  H3.3 histone B L homeolog

    See identical proteins and their annotated locations for NP_001080065.1

    Status: PROVISIONAL

    Source sequence(s)
    BC042290
    UniProtKB/Swiss-Prot
    P02302, Q05AX9, Q6PI79
    UniProtKB/TrEMBL
    A0A1L8EMY5, A0A974CQL0, Q92132
    Related
    ENSXLAP00005102982.1, ENSXLAT00005104986.1
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    47329361..47334122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041575498.1 → XP_041431432.1  H3.3 histone B L homeolog isoform X1

    UniProtKB/Swiss-Prot
    P02302, Q05AX9, Q6PI79
    UniProtKB/TrEMBL
    A0A1L8EMY5, A0A974CQL0, Q92132
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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