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XB5857568.L provisional ortholog of apolipoprotein A1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379735, updated on 4-Nov-2024

Summary

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Symbol
XB5857568.L
Full Name
provisional ortholog of apolipoprotein A1 L homeolog
Primary source
Xenbase:XB-GENE-17332639
Locus tag
XELAEV_18035463mg
See related
EnsemblRapid:ENSXLAG00005014171 AllianceGenome:Xenbase:XB-GENE-17332639
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See XB5857568.L in Genome Data Viewer
Location:
chromosome: 7L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (83806594..83816972)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (75236899..75247224)

Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene SIK family kinase 3 L homeolog Neighboring gene apolipoprotein A-I L homeolog Neighboring gene apolipoprotein A4 L homeolog Neighboring gene apolipoprotein A-IV

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68522

General protein information

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Preferred Names
uncharacterized protein LOC379735

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086574.1 → NP_001080043.1  uncharacterized protein LOC379735 precursor

    See identical proteins and their annotated locations for NP_001080043.1

    Status: PREDICTED

    Source sequence(s)
    BC059786
    UniProtKB/TrEMBL
    A0A974HC53, Q6PBB8
    Related
    ENSXLAP00005041678.1, ENSXLAT00005042670.1
    Conserved Domains (1) summary
    pfam01442
    Location:62 → 225
    Apolipoprotein; Apolipoprotein A1/A4/E domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    83806594..83816972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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