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stx16.L syntaxin 16 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379723, updated on 4-Nov-2024

Summary

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Official Symbol
stx16.L
Official Full Name
syntaxin 16 L homeolog
Primary source
Xenbase:XB-GENE-6254957
Locus tag
XELAEV_18043554mg
See related
EnsemblRapid:ENSXLAG00005029113 AllianceGenome:Xenbase:XB-GENE-6254957
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
stx16; syn16; stx16b; stx16-a; stx16-b; stx16.S
Summary
Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to act upstream of or within intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of SNARE complex. Human ortholog(s) of this gene implicated in pseudohypoparathyroidism type IB. Orthologous to human STX16 (syntaxin 16). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See stx16.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (16650827..16662132, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (16588490..16599826, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene piezo-type mechanosensitive ion channel component 2 Neighboring gene aminopeptidase like 1 L homeolog Neighboring gene protein APCDD1-like Neighboring gene RAB22A, member RAS oncogene family L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC69090

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle docking IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle fusion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
  
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
syntaxin 16 L homeolog
Names
syntaxin 16 S homeolog
syntaxin 16 b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086562.1 → NP_001080031.1  syntaxin 16 L homeolog

    See identical proteins and their annotated locations for NP_001080031.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059338
    UniProtKB/TrEMBL
    A0A974BWV3, Q6PCG1
    Related
    ENSXLAP00005086823.1, ENSXLAT00005088486.1
    Conserved Domains (2) summary
    COG5325
    Location:20 → 248
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15845
    Location:180 → 238
    SNARE_syntaxin16; SNARE motif of syntaxin 16

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    16650827..16662132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234054.2 → XP_018089543.1  syntaxin 16 L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J0TIU5

  2. XM_018234052.2 → XP_018089541.1  syntaxin 16 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0TTM4

  3. XM_018234051.2 → XP_018089540.1  syntaxin 16 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0TSK7
    Related
    ENSXLAP00005086875.1, ENSXLAT00005088537.1

  4. XM_018234053.2 → XP_018089542.1  syntaxin 16 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A1L8ESZ6, A0A974BXM5
    Related
    ENSXLAP00005086776.1, ENSXLAT00005088438.1

  5. XM_041575497.1 → XP_041431431.1  syntaxin 16 L homeolog isoform X5

    UniProtKB/TrEMBL
    A0A974BWV3, Q6PCG1
    Conserved Domains (2) summary
    COG5325
    Location:20 → 248
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15845
    Location:180 → 238
    SNARE_syntaxin16; SNARE motif of syntaxin 16
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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