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XB5901009.L uncharacterized XB5901009 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379722, updated on 4-Nov-2024

Summary

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Symbol
XB5901009.L
Full Name
uncharacterized XB5901009 L homeolog
Primary source
Xenbase:XB-GENE-5901080
Locus tag
XELAEV_180126362mg
See related
EnsemblRapid:ENSXLAG00005001758 AllianceGenome:Xenbase:XB-GENE-5901080
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
LOC548655.L
Summary
Predicted to enable small GTPase binding activity. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See XB5901009.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (94621735..94648103, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (88872031..88898791, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene MYCL proto-oncogene, bHLH transcription factor L homeolog Neighboring gene tRNA isopentenyltransferase 1 L homeolog Neighboring gene hippocalcin like 4 L homeolog Neighboring gene cytosolic 5'-nucleotidase 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC69089

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CYFIP-related Rac1 interactor A-like; uncharacterized protein LOC379722

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086561.1 → NP_001080030.1  CYFIP-related Rac1 interactor A-like

    See identical proteins and their annotated locations for NP_001080030.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059337
    UniProtKB/TrEMBL
    A0A974BS84, A0A974HYA9, Q6PCG2
    Related
    ENSXLAP00005005235.1, ENSXLAT00005005341.1
    Conserved Domains (1) summary
    pfam07159
    Location:19 → 320
    DUF1394; Protein of unknown function (DUF1394)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    94621735..94648103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041580861.1 → XP_041436795.1  uncharacterized protein LOC379722 isoform X2

    UniProtKB/TrEMBL
    A0A8J0UBN0, A0A974BS84
    Related
    ENSXLAP00005005236.1, ENSXLAT00005005342.1
    Conserved Domains (1) summary
    pfam07159
    Location:17 → 319
    DUF1394; Protein of unknown function (DUF1394)

  2. XM_018244799.2 → XP_018100288.1  uncharacterized protein LOC379722 isoform X2

    UniProtKB/TrEMBL
    A0A8J0UBN0, A0A974BS84
    Related
    ENSXLAP00005005237.1, ENSXLAT00005005343.1
    Conserved Domains (1) summary
    pfam07159
    Location:17 → 319
    DUF1394; Protein of unknown function (DUF1394)

  3. XM_041580860.1 → XP_041436794.1  uncharacterized protein LOC379722 isoform X1

    UniProtKB/TrEMBL
    A0A974BS84, A0A974HYA9, Q6PCG2
    Conserved Domains (1) summary
    pfam07159
    Location:19 → 320
    DUF1394; Protein of unknown function (DUF1394)

  4. XM_018244798.2 → XP_018100287.1  uncharacterized protein LOC379722 isoform X2

    UniProtKB/TrEMBL
    A0A8J0UBN0, A0A974BS84
    Related
    ENSXLAP00005005238.1, ENSXLAT00005005344.1
    Conserved Domains (1) summary
    pfam07159
    Location:17 → 319
    DUF1394; Protein of unknown function (DUF1394)
Nucleotide Protein Strain
Heading Accession and Version

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