tfcp2l1.S transcription factor CP2-like 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tfcp2l1.S
Official Full Name: transcription factor CP2-like 1 S homeolog
Primary source: Xenbase:XB-GENE-6255174
Locus tag: XELAEV_18046926mg
See related: EnsemblRapid:ENSXLAG00005016306 AllianceGenome:Xenbase:XB-GENE-6255174
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: XLBP; lbp9; crtr1; lbp-9; tfcp2l1; tfcp2l1b; tfcp2l1-a; tfcp2l1-b
Summary: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 9_10S

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10S	NC_054388.1 (48441251..48465538)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10S	NC_030741.1 (41769843..41794336)

Chromosome 9_10S - NC_054388.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription activator activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transcription factor CP2-like 1 S homeolog

Names: transcription factor CP2-like 1 b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086528.1 → NP_001079997.1 transcription factor CP2-like 1 S homeolog

See identical proteins and their annotated locations for NP_001079997.1

Status: PROVISIONAL

Source sequence(s)

BC059295

UniProtKB/TrEMBL

A0A974H128, Q6PCK1

Related

ENSXLAP00005048047.1, ENSXLAT00005049162.1

Conserved Domains (3) summary

cd09590
Location:328 → 394

SAM_LBP9; SAM domain of LBP9 transcriptional factors

smart00454
Location:328 → 369

SAM; Sterile alpha motif

pfam04516
Location:34 → 237

CP2; CP2 transcription factor