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cbfa2t2.S CBFA2/RUNX1 translocation partner 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379635, updated on 17-Aug-2024

Summary

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Official Symbol
cbfa2t2.S
Official Full Name
CBFA2/RUNX1 translocation partner 2 S homeolog
Primary source
Xenbase:XB-GENE-17339380
Locus tag
XELAEV_18046641mg
See related
EnsemblRapid:ENSXLAG00005029233
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
MTGR1; XETOR
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Genomic context

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See cbfa2t2.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (37701631..37727662)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (31561596..31587972)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene syntrophin, alpha 1 S homeolog Neighboring gene bactericidal permeability-increasing protein-like Neighboring gene interleukin-17D Neighboring gene N-terminal EF-hand calcium binding protein 3 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68858

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Protein CBFA2T2-like; uncharacterized protein LOC379635
Names
core-binding factor, runt domain, alpha subunit 2; translocated to, 2 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086475.1 → NP_001079944.1  Protein CBFA2T2-like

    See identical proteins and their annotated locations for NP_001079944.1

    Status: PROVISIONAL

    Source sequence(s)
    BC057713
    UniProtKB/TrEMBL
    A0A974BTD7, Q6PF64
    Related
    ENSXLAP00005087332.1, ENSXLAT00005088994.1
    Conserved Domains (4) summary
    pfam01753
    Location:479 → 515
    zf-MYND; MYND finger
    pfam07531
    Location:86 → 172
    TAFH; NHR1 homology to TAF
    pfam08788
    Location:304 → 370
    NHR2; NHR2 domain like
    cl23750
    Location:414 → 475
    vATP-synt_E; ATP synthase (E/31 kDa) subunit

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    37701631..37727662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018237193.2 → XP_018092682.1  uncharacterized protein LOC379635 isoform X1

    UniProtKB/TrEMBL
    A0A1L8EMR4, A0A974BTD7, A0A974BU35
    Related
    ENSXLAP00005087533.1, ENSXLAT00005089195.1

  2. XM_018237194.2 → XP_018092683.1  uncharacterized protein LOC379635 isoform X2

    UniProtKB/TrEMBL
    A0A8J0TXC8, A0A974BTD7
    Related
    ENSXLAP00005087608.1, ENSXLAT00005089269.1
Nucleotide Protein Strain
Heading Accession and Version

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