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ctdsp2.L CTD small phosphatase 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379620, updated on 4-Nov-2024

Summary

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Official Symbol
ctdsp2.L
Official Full Name
CTD small phosphatase 2 L homeolog
Primary source
Xenbase:XB-GENE-951116
Locus tag
XELAEV_18013473mg
See related
EnsemblRapid:ENSXLAG00005006108 AllianceGenome:Xenbase:XB-GENE-951116
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
xOs4; ctdsp2
Summary
Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity and myosin phosphatase activity. Is expressed in anatomical system; ectoderm; and pharyngeal arch. Orthologous to human CTDSP2 (CTD small phosphatase 2). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See ctdsp2.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (149532514..149567131, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (143650061..143684849, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene Ts translation elongation factor, mitochondrial L homeolog Neighboring gene advillin L homeolog Neighboring gene HIG1 hypoxia inducible domain family member 1C L homeolog Neighboring gene solute carrier family 11 member 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression cloning of Xenopus Os4, an evolutionarily conserved gene, which induces mesoderm and dorsal axis. Zohn IE, et al. Dev Biol, 2001 Nov 1. PMID 11784023
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68415

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables myosin phosphatase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CTD small phosphatase 2 L homeolog
Names
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
Os4
NP_001079929.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086460.1 → NP_001079929.1  CTD small phosphatase 2 L homeolog

    See identical proteins and their annotated locations for NP_001079929.1

    Status: PROVISIONAL

    Source sequence(s)
    BC057696
    UniProtKB/TrEMBL
    A0A974DQP9, Q8UWD4
    Related
    ENSXLAP00005018280.1, ENSXLAT00005018576.1
    Conserved Domains (2) summary
    COG5190
    Location:90 → 266
    FCP1; TFIIF-interacting CTD phosphatase, includes NLI-interacting factor [Transcription]
    TIGR02251
    Location:101 → 260
    HIF-SF_euk; Dullard-like phosphatase domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    149532514..149567131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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