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rbmx2.L RNA binding motif protein X-linked 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379603, updated on 4-Nov-2024

Summary

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Official Symbol
rbmx2.L
Official Full Name
RNA binding motif protein X-linked 2 L homeolog
Primary source
Xenbase:XB-GENE-5891794
Locus tag
XELAEV_18038551mg
See related
EnsemblRapid:ENSXLAG00005026706 AllianceGenome:Xenbase:XB-GENE-5891794
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rbmx2
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP; catalytic step 2 spliceosome; and precatalytic spliceosome. Orthologous to human RBMX2 (RNA binding motif protein X-linked 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rbmx2.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (25656450..25672037, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (16109925..16125427)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA36 family Neighboring gene small nucleolar RNA SNORD83 Neighboring gene dyskeratosis congenita 1, dyskerin L homeolog Neighboring gene BRCA1/BRCA2-containing complex subunit 3 L homeolog Neighboring gene Rho GTPase activating protein 36 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC64376

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
  
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
  
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNA binding motif protein X-linked 2 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086444.1 → NP_001079913.1  RNA binding motif protein X-linked 2 L homeolog

    See identical proteins and their annotated locations for NP_001079913.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056844
    UniProtKB/TrEMBL
    A0A974C608, Q6PGS9
    Conserved Domains (2) summary
    COG0724
    Location:38 → 119
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12411
    Location:27 → 115
    RRM_ist3_like; RNA recognition motif in ist3 family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    25656450..25672037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041571898.1 → XP_041427832.1  RNA binding motif protein X-linked 2 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LE75, A0A974C608
    Related
    ENSXLAP00005079359.1, ENSXLAT00005080950.1
    Conserved Domains (2) summary
    smart00360
    Location:49 → 120
    RRM; RNA recognition motif
    TIGR01622
    Location:204 → 282
    SF-CC1; splicing factor, CC1-like family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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