XB5729975.S novel C3HC4 type (RING finger) and B-box zinc finger protein with SPRY domain S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Symbol: XB5729975.S
Full Name: novel C3HC4 type (RING finger) and B-box zinc finger protein with SPRY domain S homeolog
Primary source: Xenbase:XB-GENE-5729987
Locus tag: XELAEV_18047819mg
See related: EnsemblRapid:ENSXLAG00005009316 AllianceGenome:Xenbase:XB-GENE-5729987
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: LOC734077.S; XB5729975.L
Summary: Predicted to enable zinc ion binding activity. Predicted to act upstream of or within immune system process. [provided by Alliance of Genome Resources, Nov 2024]
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 9_10S

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10S	NC_054388.1 (107144000..107160700)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10S	NC_030741.1 (100506121..100522258)

Chromosome 9_10S - NC_054388.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within immune system process	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: uncharacterized protein LOC379589

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086430.1 → NP_001079899.1 uncharacterized protein LOC379589

See identical proteins and their annotated locations for NP_001079899.1

Status: PREDICTED

Source sequence(s)

BC056131

UniProtKB/TrEMBL

Q7T0L9

Related

ENSXLAP00005027132.1, ENSXLAT00005027864.1

Conserved Domains (4) summary

pfam00643
Location:138 → 178

zf-B_box; B-box zinc finger

cd12891
Location:362 → 527

SPRY_PRY_C-I_2; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM14-like, TRIM16-like, TRIM25-like, TRIM47-like, TRIM65 and RNF135, and stonustoxin

cl17238
Location:12 → 56

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

cl23765
Location:215 → 300

iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

107144000..107160700

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041577623.1 → XP_041433557.1 uncharacterized protein LOC379589 isoform X1

UniProtKB/TrEMBL

A0A1L8ER54, A0A974H285

Conserved Domains (5) summary

TIGR04523
Location:199 → 298

Mplasa_alph_rch; helix-rich Mycoplasma protein

cd12891
Location:361 → 526

SPRY_PRY_C-I_2; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM14-like, TRIM16-like, TRIM25-like, TRIM47-like, TRIM65 and RNF135, and stonustoxin

cd16595
Location:9 → 57

RING-HC_TRIM17_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein TRIM17 and similar proteins

cd19769
Location:140 → 186

Bbox2_TRIM16-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM16, TRIM29, TRIM47 and similar proteins

cl00034
Location:91 → 133

Bbox_SF; B-box-type zinc finger superfamily