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rnf167.L ring finger protein 167 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379582, updated on 4-Nov-2024

Summary

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Official Symbol
rnf167.L
Official Full Name
ring finger protein 167 L homeolog
Primary source
Xenbase:XB-GENE-17340806
Locus tag
XELAEV_18019510mg
See related
EnsemblRapid:ENSXLAG00005025063 AllianceGenome:Xenbase:XB-GENE-17340806
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable zinc ion binding activity. Predicted to be located in endomembrane system and membrane. Orthologous to human RNF167 (ring finger protein 167). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rnf167.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (158459672..158475967)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (141405518..141421206)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 15 L homeolog Neighboring gene provisional ortholog of NFAT activating protein with ITAM motif 1 L homeolog Neighboring gene profilin 1 L homeolog Neighboring gene enolase 3 (beta, muscle) L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC69137

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC379582

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086423.1 → NP_001079892.1  uncharacterized protein LOC379582 precursor

    See identical proteins and their annotated locations for NP_001079892.1

    Status: PREDICTED

    Source sequence(s)
    BC056113
    UniProtKB/TrEMBL
    A0A974DFD1, Q7T0N4
    Related
    ENSXLAP00005074560.1, ENSXLAT00005076142.1
    Conserved Domains (2) summary
    cd02123
    Location:18 → 175
    PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
    cd16797
    Location:233 → 278
    RING-H2_RNF167; RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    158459672..158475967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018250659.2 → XP_018106148.1  uncharacterized protein LOC379582 isoform X1

    UniProtKB/TrEMBL
    A0A974DFD1, Q7T0N4
    Conserved Domains (2) summary
    cd02123
    Location:18 → 175
    PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
    cd16797
    Location:233 → 278
    RING-H2_RNF167; RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins

  2. XM_018250655.2 → XP_018106144.1  uncharacterized protein LOC379582 isoform X1

    UniProtKB/TrEMBL
    A0A974DFD1, Q7T0N4
    Conserved Domains (2) summary
    cd02123
    Location:18 → 175
    PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
    cd16797
    Location:233 → 278
    RING-H2_RNF167; RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins

  3. XM_018250658.2 → XP_018106147.1  uncharacterized protein LOC379582 isoform X1

    UniProtKB/TrEMBL
    A0A974DFD1, Q7T0N4
    Conserved Domains (2) summary
    cd02123
    Location:18 → 175
    PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
    cd16797
    Location:233 → 278
    RING-H2_RNF167; RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins

  4. XM_041584934.1 → XP_041440868.1  uncharacterized protein LOC379582 isoform X1

    UniProtKB/TrEMBL
    A0A974DFD1, Q7T0N4
    Related
    ENSXLAP00005074602.1, ENSXLAT00005076181.1
    Conserved Domains (2) summary
    cd02123
    Location:18 → 175
    PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
    cd16797
    Location:233 → 278
    RING-H2_RNF167; RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins

  5. XM_018250657.2 → XP_018106146.1  uncharacterized protein LOC379582 isoform X1

    UniProtKB/TrEMBL
    A0A974DFD1, Q7T0N4
    Related
    ENSXLAP00005074515.1, ENSXLAT00005076095.1
    Conserved Domains (2) summary
    cd02123
    Location:18 → 175
    PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
    cd16797
    Location:233 → 278
    RING-H2_RNF167; RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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