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tfb1m.L transcription factor B1, mitochondrial L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379540, updated on 4-Nov-2024

Summary

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Official Symbol
tfb1m.L
Official Full Name
transcription factor B1, mitochondrial L homeolog
Primary source
Xenbase:XB-GENE-6255481
Locus tag
XELAEV_18043380mg
See related
EnsemblRapid:ENSXLAG00005036640 AllianceGenome:Xenbase:XB-GENE-6255481
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tfb1m
Summary
Predicted to enable S-adenosyl-L-methionine binding activity and rRNA (adenine-N6,N6-)-dimethyltransferase activity. Predicted to act upstream of or within rRNA methylation. Predicted to be located in mitochondrial matrix. Orthologous to human TFB1M (transcription factor B1, mitochondrial). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tfb1m.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (7754861..7767322)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (7728793..7741311)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene tousled like kinase 2 L homeolog Neighboring gene chromosome 9_10 C1orf198 homolog L homeolog Neighboring gene cartilage associated protein L homeolog Neighboring gene solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 L homeolog Neighboring gene DNA-dependent metalloprotease SPRTN-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68924

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables S-adenosyl-L-methionine binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables mitochondrial transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables rRNA (adenine-N6,N6-)-dimethyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables rRNA (adenine-N6,N6-)-dimethyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within methylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within rRNA methylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within rRNA methylation ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within rRNA modification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within rRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within transcription initiation at mitochondrial promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
dimethyladenosine transferase 1, mitochondrial
Names
S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1
mitochondrial 12S rRNA dimethylase 1
mitochondrial transcription factor B1
mtTFB1
NP_001079850.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086381.1 → NP_001079850.1  dimethyladenosine transferase 1, mitochondrial

    See identical proteins and their annotated locations for NP_001079850.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056010
    UniProtKB/Swiss-Prot
    Q7T0W5
    UniProtKB/TrEMBL
    A0A974H2S8
    Related
    ENSXLAP00005109769.1, ENSXLAT00005111971.1
    Conserved Domains (1) summary
    PRK00274
    Location:15 → 310
    ksgA; 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    7754861..7767322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7T0W5.1 GenPept UniProtKB/Swiss-Prot:Q7T0W5

Gene LinkOut

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