snrnp40.L small nuclear ribonucleoprotein, U5 40kDa subunit L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: snrnp40.L
Official Full Name: small nuclear ribonucleoprotein, U5 40kDa subunit L homeolog
Primary source: Xenbase:XB-GENE-957420
Locus tag: XELAEV_18012059mg
See related: EnsemblRapid:ENSXLAG00005028904
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: spf38; wdr57; prp8bp; snrnp40; snrnp40-a; snrnp40-b
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Genomic context

Location:: chromosome: 2L

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2L	NC_054373.1 (59424074..59432463, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2L	NC_030726.1 (56953535..56961867, complement)

Chromosome 2L - NC_054373.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of catalytic step 2 spliceosome	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: small nuclear ribonucleoprotein, U5 40kDa subunit L homeolog

Names: small nuclear ribonucleoprotein 40kDa (U5)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086355.1 → NP_001079824.1 small nuclear ribonucleoprotein, U5 40kDa subunit L homeolog

See identical proteins and their annotated locations for NP_001079824.1

Status: PROVISIONAL

Source sequence(s)

BC054992

UniProtKB/TrEMBL

A0A974DLW7, Q7SY66

Related

ENSXLAP00005086175.1, ENSXLAT00005087835.1

Conserved Domains (3) summary

COG2319
Location:40 → 333

WD40; WD40 repeat [General function prediction only]

cd00200
Location:42 → 333

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:50 → 87

7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

59424074..59432463 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)