spata2.L spermatogenesis associated 2 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: spata2.L
Official Full Name: spermatogenesis associated 2 L homeolog
Primary source: Xenbase:XB-GENE-1000072
Locus tag: XELAEV_18043438mg
See related: EnsemblRapid:ENSXLAG00005035424 AllianceGenome:Xenbase:XB-GENE-1000072
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: pd1; tamo; spata2
Summary: Predicted to act upstream of or within protein deubiquitination; regulation of necroptotic process; and regulation of tumor necrosis factor-mediated signaling pathway. Predicted to be located in cytoplasm. Orthologous to human SPATA2 (spermatogenesis associated 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 9_10L

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10L	NC_054387.1 (10629032..10640458)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10L	NC_030740.1 (10505351..10516780)

Chromosome 9_10L - NC_054387.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within protein K63-linked deubiquitination	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein linear deubiquitination	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of necroptotic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of tumor necrosis factor-mediated signaling pathway	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: spermatogenesis associated 2 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086314.1 → NP_001079783.1 spermatogenesis associated 2 L homeolog

See identical proteins and their annotated locations for NP_001079783.1

Status: PROVISIONAL

Source sequence(s)

BC054226

UniProtKB/TrEMBL

Q7SYX8

Conserved Domains (1) summary

cl15262
Location:67 → 170

PUB; PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins