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tpm4.L tropomyosin 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379469, updated on 17-Aug-2024

Summary

Official Symbol
tpm4.L
Official Full Name
tropomyosin 4 L homeolog
Primary source
Xenbase:XB-GENE-6077166
Locus tag
XELAEV_18006390mg
See related
EnsemblRapid:ENSXLAG00005023915
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tm4; TM-4; tpm4; tpm4b; tpm4-a; tpm4-b; tpm4.S
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Genomic context

See tpm4.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (113854553..113936223)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (101798784..101881098)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene calcium and integrin-binding family member 3 Neighboring gene hematopoietic SH2 domain-containing protein Neighboring gene RAB8A, member RAS oncogene family L homeolog Neighboring gene pinhead L homeolog

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC64401

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within actin filament organization IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within muscle contraction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
tropomyosin 4 L homeolog
Names
cardiac tropomyosin
tropomyosin 4 S homeolog
tropomyosin 4 b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086310.1NP_001079779.1  tropomyosin 4 L homeolog

    See identical proteins and their annotated locations for NP_001079779.1

    Status: PROVISIONAL

    Source sequence(s)
    BC054220
    UniProtKB/TrEMBL
    Q7SYY4
    Related
    ENSXLAP00005070907.1, ENSXLAT00005072453.1
    Conserved Domains (1) summary
    pfam00261
    Location:48281
    Tropomyosin

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    113854553..113936223
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018262103.2XP_018117592.1  tropomyosin 4 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0V5K0, Q91726
  2. XM_018262160.2XP_018117649.1  tropomyosin 4 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0V9H9, Q91865
    Related
    ENSXLAP00005070874.1, ENSXLAT00005072420.1
  3. XM_018262280.2XP_018117769.1  tropomyosin 4 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J0V9L9
    Related
    ENSXLAP00005070837.1, ENSXLAT00005072383.1