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tmed10.S transmembrane emp24-like trafficking protein 10 (yeast) S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379451, updated on 4-Nov-2024

Summary

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Official Symbol
tmed10.S
Official Full Name
transmembrane emp24-like trafficking protein 10 (yeast) S homeolog
Primary source
Xenbase:XB-GENE-18005878
Locus tag
XELAEV_18041367mg
See related
EnsemblRapid:ENSXLAG00005010876 AllianceGenome:Xenbase:XB-GENE-18005878
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to act upstream of or within Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to be located in several cellular components, including Golgi apparatus; cytoplasmic vesicle; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED10 (transmembrane p24 trafficking protein 10). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tmed10.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (25723679..25730392, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (25615350..25622063, complement)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene interferon regulatory factor 2 binding protein-like S homeolog Neighboring gene basic leucine zipper transcription factor, ATF-like S homeolog Neighboring gene FBJ murine osteosarcoma viral oncogene homolog S homeolog Neighboring gene zinc finger, C2HC-type containing 1C S homeolog Neighboring gene acylphosphatase 1, erythrocyte (common) type S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC64308

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within Golgi organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
  
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC379451

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086292.2 → NP_001079761.1  uncharacterized protein LOC379451 precursor

    See identical proteins and their annotated locations for NP_001079761.1

    Status: PREDICTED

    Source sequence(s)
    BC054179
    UniProtKB/TrEMBL
    A0A974C232, A0A974H858, Q7SZ16
    Related
    ENSXLAP00005032076.1, ENSXLAT00005032856.1
    Conserved Domains (1) summary
    pfam01105
    Location:19 → 201
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    25723679..25730392 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials