id3.S inhibitor of DNA binding 3, HLH protein S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: id3.S
Official Full Name: inhibitor of DNA binding 3, HLH protein S homeolog
Primary source: Xenbase:XB-GENE-866418
Locus tag: XELAEV_18015089mg
See related: EnsemblRapid:ENSXLAG00005008451
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: id3; xIdx; xid3; id3-a; id3-b; xidia; XIdIIa; heir-1
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Genomic context

Location:: chromosome: 2S

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (68321643..68323592, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2S	NC_030727.1 (63948035..63949984, complement)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables bHLH transcription factor binding	ISS Inferred from Sequence or Structural Similarity more info
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell differentiation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within circadian regulation of gene expression	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within negative regulation of DNA binding	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within negative regulation of DNA-templated transcription	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within neural crest formation	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulation of cell cycle	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within rhythmic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: DNA-binding protein inhibitor ID-3-B

Names: Inhibitor of DNA binding 3-B; inhibitor of DNA binding 3, dominant negative helix-loop-helix protein S homeolog; inhibitor of differentiation 3-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086288.1 → NP_001079757.1 DNA-binding protein inhibitor ID-3-B

See identical proteins and their annotated locations for NP_001079757.1

Status: PROVISIONAL

Source sequence(s)

BC054166

UniProtKB/Swiss-Prot

Q7SZ28, Q91418

UniProtKB/TrEMBL

A0A974DHV4

Related

ENSXLAP00005024403.1, ENSXLAT00005025111.1

Conserved Domains (1) summary

smart00353
Location:47 → 90

HLH; helix loop helix domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

68321643..68323592 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)