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dnase1l3.S deoxyribonuclease 1l3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379439, updated on 4-Nov-2024

Summary

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Official Symbol
dnase1l3.S
Official Full Name
deoxyribonuclease 1l3 S homeolog
Primary source
Xenbase:XB-GENE-6078563
Locus tag
XELAEV_18003055mg
See related
EnsemblRapid:ENSXLAG00005004308 AllianceGenome:Xenbase:XB-GENE-6078563
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
dhp2; drng-a; dnas1l3; dnase1l3; dnase1l3.L
Summary
Predicted to enable DNA binding activity and deoxyribonuclease I activity. Predicted to act upstream of or within DNA catabolic process. Predicted to be located in nucleus. Orthologous to human DNASE1L3 (deoxyribonuclease 1L3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See dnase1l3.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (128354858..128365682)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694831.1 (1768419..1772736, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016719204.1 (238..499)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene extended synaptotagmin-3-like Neighboring gene extended synaptotagmin-1-like Neighboring gene abhydrolase domain containing 6 S homeolog Neighboring gene extended synaptotagmin-1-like Neighboring gene synthesis of cytochrome C oxidase 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. cDNA cloning and functional characterization of Xenopus laevis DNase gamma. Shiokawa D, et al. Apoptosis, 2006 Apr. PMID 16547842
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Cloning and apoptotic DNase activity of Xenopus laevis DNase gamma
    Title: cDNA cloning and functional characterization of Xenopus laevis DNase gamma.
Submit: New GeneRIF Correction

General gene information

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Homology

Clone Names

  • MGC64241

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA nuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables deoxyribonuclease I activity IEA
Inferred from Electronic Annotation
more info
  
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
deoxyribonuclease 1l3 S homeolog; deoxyribonuclease I-like 3 S homeolog
Names
deoxyribonuclease I-like 3 L homeolog
deoxyribonuclease gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086281.1 → NP_001079750.1  deoxyribonuclease 1l3 S homeolog precursor

    See identical proteins and their annotated locations for NP_001079750.1

    Status: PROVISIONAL

    Source sequence(s)
    AF059612
    UniProtKB/TrEMBL
    Q7SZ47, Q9YI04
    Related
    ENSXLAP00005012864.1, ENSXLAT00005013043.1
    Conserved Domains (1) summary
    smart00476
    Location:1 → 279
    DNaseIc; deoxyribonuclease I

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    128354858..128365682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041591159.1 → XP_041447093.1  deoxyribonuclease I-like 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1N0S9, Q7ZYD1
    Conserved Domains (1) summary
    cl00490
    Location:16 → 250
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  2. XM_041591161.1 → XP_041447095.1  deoxyribonuclease I-like 3 S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1N1J9
    Conserved Domains (1) summary
    cl00490
    Location:1 → 225
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  3. XM_041591160.1 → XP_041447094.1  deoxyribonuclease I-like 3 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1MYY0, Q7SZ47
    Related
    ENSXLAP00005012859.1, ENSXLAT00005013038.1
    Conserved Domains (1) summary
    smart00476
    Location:1 → 249
    DNaseIc; deoxyribonuclease I
Nucleotide Protein Strain
Heading Accession and Version

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