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hmgn3.S high mobility group nucleosomal binding domain 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379409, updated on 4-Nov-2024

Summary

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Official Symbol
hmgn3.S
Official Full Name
high mobility group nucleosomal binding domain 3 S homeolog
Primary source
Xenbase:XB-GENE-482147
Locus tag
XELAEV_18029439mg
See related
EnsemblRapid:ENSXLAG00005002923 AllianceGenome:Xenbase:XB-GENE-482147
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
hmgn3; trip7; hmgn3a; hmgn3-a; hmgn3-b; pnas-24; pnas-25
Summary
Predicted to enable nucleosomal DNA binding activity. Predicted to act upstream of or within chromatin organization. Predicted to be located in chromatin and nucleus. Orthologous to human HMGN3 (high mobility group nucleosomal binding domain 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See hmgn3.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (76764512..76770990)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (72098815..72105350)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene SH3 domain binding glutamate-rich protein like 2 S homeolog Neighboring gene uncharacterized LOC121394252 Neighboring gene pleckstrin homology domain interacting protein S homeolog Neighboring gene interleukin 1 receptor associated kinase 1 binding protein 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC64252

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleosomal DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromatin IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
high mobility group nucleosomal binding domain 3 S homeolog
Names
high mobility group nucleosomal binding domain 3 a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086253.1 → NP_001079722.1  high mobility group nucleosomal binding domain 3 S homeolog

    See identical proteins and their annotated locations for NP_001079722.1

    Status: PROVISIONAL

    Source sequence(s)
    BC053757
    UniProtKB/TrEMBL
    Q7SZC1
    Related
    ENSXLAP00005008722.1, ENSXLAT00005008848.1

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    76764512..76770990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018264233.2 → XP_018119722.1  high mobility group nucleosomal binding domain 3 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0VA22
    Related
    ENSXLAP00005008727.1, ENSXLAT00005008853.1

  2. XM_018264231.2 → XP_018119720.1  high mobility group nucleosomal binding domain 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0VDC7
    Related
    ENSXLAP00005008730.1, ENSXLAT00005008856.1

  3. XM_018264234.2 → XP_018119723.1  high mobility group nucleosomal binding domain 3 S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J0VCY2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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