cldn7.L claudin 7 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: cldn7.L
Official Full Name: claudin 7 L homeolog
Primary source: Xenbase:XB-GENE-6078955
Locus tag: XELAEV_18019668mg
See related: EnsemblRapid:ENSXLAG00005021572 AllianceGenome:Xenbase:XB-GENE-6078955
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: cldn7
Summary: Predicted to enable structural molecule activity. Predicted to act upstream of or within bicellular tight junction assembly and cell adhesion. Predicted to be located in bicellular tight junction and plasma membrane. Is expressed in dermal system and ectoderm. Orthologous to human CLDN7 (claudin 7). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 3L

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	3L	NC_054375.1 (161077732..161082547, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	3L	NC_030728.1 (143932070..143936855)

Chromosome 3L - NC_054375.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables structural molecule activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within bicellular tight junction assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within cell adhesion	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in bicellular tight junction	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: claudin 7 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086240.1 → NP_001079709.1 claudin 7 L homeolog

See identical proteins and their annotated locations for NP_001079709.1

Status: PROVISIONAL

Source sequence(s)

BC048771

UniProtKB/TrEMBL

A0A974DHB8, Q7ZSZ2

Related

ENSXLAP00005063345.1, ENSXLAT00005064809.1

Conserved Domains (1) summary

pfam00822
Location:4 → 182

PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

161077732..161082547 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)