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sdcbp2.L syndecan binding protein 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379391, updated on 16-Apr-2024

Summary

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Official Symbol
sdcbp2.L
Official Full Name
syndecan binding protein 2 L homeolog
Primary source
Xenbase:XB-GENE-29099392
Locus tag
XELAEV_18043641mg
See related
EnsemblRapid:ENSXLAG00005033449
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See sdcbp2.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (18807905..18813590)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (18448488..18454173)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene traf2 and NCK-interacting protein kinase Neighboring gene uncharacterized LOC108700959 Neighboring gene FKBP prolyl isomerase 1A L homeolog Neighboring gene transmembrane protein 74B L homeolog Neighboring gene syntaphilin L homeolog Neighboring gene proteasome inhibitor subunit 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC52622

General protein information

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Preferred Names
syndecan binding protein 2 L homeolog
Names
Syntenin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086235.1 → NP_001079704.1  syndecan binding protein 2 L homeolog

    See identical proteins and their annotated locations for NP_001079704.1

    Status: PROVISIONAL

    Source sequence(s)
    BC048018
    UniProtKB/TrEMBL
    A0A974BX63, Q801P2
    Related
    ENSXLAP00005099907.1, ENSXLAT00005101848.1
    Conserved Domains (1) summary
    cd00992
    Location:104 → 183
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    18807905..18813590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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