U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

xnf7.S Nuclear factor 7 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379381, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
xnf7.S
Official Full Name
Nuclear factor 7 S homeolog
Primary source
Xenbase:XB-GENE-6256071
Locus tag
XELAEV_18004555mg
See related
EnsemblRapid:ENSXLAG00005008394 AllianceGenome:Xenbase:XB-GENE-6256071
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
xnf7-a; xnf7-b; xnf7-o
Summary
Predicted to enable DNA binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to act upstream of or within protein ubiquitination and regulation of DNA-templated transcription. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See xnf7.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (112973665..112984518)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694878.1 (440420..451258, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene histone acetyltransferase KAT8-like Neighboring gene zinc-binding protein A33 Neighboring gene branched chain ketoacid dehydrogenase kinase S homeolog Neighboring gene cardiotrophin-2 Neighboring gene F-box and leucine-rich repeat protein 19 S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Two forms of Xenopus nuclear factor 7 have overlapping spatial but different temporal patterns of expression during development. Gong SG, et al. Mech Dev, 1995 Aug. PMID 8541218
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC52568

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
nuclear factor 7, ovary

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086225.2 → NP_001079694.2  nuclear factor 7, ovary

    See identical proteins and their annotated locations for NP_001079694.2

    Status: PROVISIONAL

    Source sequence(s)
    S80988
    UniProtKB/Swiss-Prot
    Q801R9, Q91431
    UniProtKB/TrEMBL
    A9JS19
    Related
    ENSXLAP00005024252.1, ENSXLAT00005024961.1
    Conserved Domains (6) summary
    smart00336
    Location:224 → 261
    BBOX; B-Box-type zinc finger
    pfam11717
    Location:20 → 76
    Tudor-knot; RNA binding activity-knot of a chromodomain
    pfam15227
    Location:146 → 185
    zf-C3HC4_4; zinc finger of C3HC4-type, RING
    cd13733
    Location:437 → 605
    SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty
    cl17182
    Location:54 → 155
    NAT_SF; N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate
    cl23765
    Location:274 → 394
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    112973665..112984518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q91431.1 GenPept UniProtKB/Swiss-Prot:Q91431

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials