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ssr2.S signal sequence receptor, beta (translocon-associated protein beta) S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379368, updated on 4-Nov-2024

Summary

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Official Symbol
ssr2.S
Official Full Name
signal sequence receptor, beta (translocon-associated protein beta) S homeolog
Primary source
Xenbase:XB-GENE-970414
See related
EnsemblRapid:ENSXLAG00005029366 AllianceGenome:Xenbase:XB-GENE-970414
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ssr2; ssr2.L
Summary
Predicted to be located in endoplasmic reticulum membrane. Orthologous to human SSR2 (signal sequence receptor subunit 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ssr2.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (101414652..101422535, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (96411838..96419880, complement)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene relaxin family peptide/INSL5 receptor 4 S homeolog Neighboring gene Rho/Rac guanine nucleotide exchange factor 2 S homeolog Neighboring gene chaperonin containing TCP1 subunit 3 S homeolog Neighboring gene glycosylated lysosomal membrane protein S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
signal sequence receptor, beta
Names
signal sequence receptor, beta (translocon-associated protein beta) L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086212.1 → NP_001079681.1  signal sequence receptor, beta precursor

    See identical proteins and their annotated locations for NP_001079681.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046938
    UniProtKB/TrEMBL
    Q98SP1
    Related
    ENSXLAP00005088102.1, ENSXLAT00005089764.1
    Conserved Domains (1) summary
    pfam05753
    Location:18 → 179
    TRAP_beta; Translocon-associated protein beta (TRAPB)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    101414652..101422535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041574074.1 → XP_041430008.1  signal sequence receptor, beta isoform X1

    UniProtKB/TrEMBL
    Q98SP1
    Related
    ENSXLAP00005087893.1, ENSXLAT00005089555.1
    Conserved Domains (1) summary
    pfam05753
    Location:18 → 179
    TRAP_beta; Translocon-associated protein beta (TRAPB)

  2. XM_041574075.1 → XP_041430009.1  signal sequence receptor, beta isoform X1

    UniProtKB/TrEMBL
    Q98SP1
    Related
    ENSXLAP00005087802.1, ENSXLAT00005089464.1
    Conserved Domains (1) summary
    pfam05753
    Location:18 → 179
    TRAP_beta; Translocon-associated protein beta (TRAPB)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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