U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rpn2.S ribophorin II S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379348, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
rpn2.S
Official Full Name
ribophorin II S homeolog
Primary source
Xenbase:XB-GENE-941836
Locus tag
XELAEV_18046585mg
See related
EnsemblRapid:ENSXLAG00005035422 AllianceGenome:Xenbase:XB-GENE-941836
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rpn2
Summary
Predicted to act upstream of or within protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of oligosaccharyltransferase complex. Orthologous to human RPN2 (ribophorin II). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rpn2.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (33434709..33455616, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (27939246..27960179, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene SRC proto-oncogene, non-receptor tyrosine kinase S homeolog Neighboring gene U6 spliceosomal RNA Neighboring gene mannosidase, beta A, lysosomal-like S homeolog Neighboring gene elastin microfibril interfacer 3 S homeolog Neighboring gene myosin light chain 9 S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Wnt signalling regulates paxillin ubiquitination essential for mesodermal cell motility. Iioka H, et al. Nat Cell Biol, 2007 Jul. PMID 17558393
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC53764

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
part_of oligosaccharyltransferase complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ribophorin II S homeolog
NP_001079661.1
XP_018092670.1
XP_018092671.1
XP_018092672.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086192.1 → NP_001079661.1  ribophorin II S homeolog precursor

    See identical proteins and their annotated locations for NP_001079661.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046727
    UniProtKB/TrEMBL
    A0A974BTW6, Q7ZWS4
    Related
    ENSXLAP00005106118.1, ENSXLAT00005108193.1
    Conserved Domains (1) summary
    pfam05817
    Location:9 → 624
    Ribophorin_II; Oligosaccharyltransferase subunit Ribophorin II

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    33434709..33455616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018237182.2 → XP_018092671.1  ribophorin II S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0TYJ4, A0A974BTW6
    Related
    ENSXLAP00005106098.1, ENSXLAT00005108174.1

  2. XM_018237183.2 → XP_018092672.1  ribophorin II S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J0U055, A0A974BTW6

  3. XM_018237181.2 → XP_018092670.1  ribophorin II S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0TXB6, A0A974BTW6
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.