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chtop.S chromatin target of PRMT1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379302, updated on 4-Nov-2024

Summary

Official Symbol
chtop.S
Official Full Name
chromatin target of PRMT1 S homeolog
Primary source
Xenbase:XB-GENE-997796
Locus tag
XELAEV_18042959mg
See related
EnsemblRapid:ENSXLAG00005008302 AllianceGenome:Xenbase:XB-GENE-997796
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fop; srag; chtop; pp7704; c1orf77
Summary
Predicted to enable RNA binding activity. Orthologous to human CHTOP (chromatin target of PRMT1). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

See chtop.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (102527766..102534202)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (97539288..97545710)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene protein S100-G Neighboring gene protein S100-A13-like Neighboring gene S100 calcium binding protein A1 S homeolog Neighboring gene SMAD family member 10 S homeolog Neighboring gene SNAP-associated protein S homeolog

Genomic regions, transcripts, and products

General protein information

Preferred Names
chromatin target of PRMT1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086146.1NP_001079615.1  chromatin target of PRMT1 S homeolog

    See identical proteins and their annotated locations for NP_001079615.1

    Status: PROVISIONAL

    Source sequence(s)
    AB018189
    UniProtKB/TrEMBL
    O93501, Q3B8B6
    Related
    ENSXLAP00005023870.1, ENSXLAT00005024578.1
    Conserved Domains (1) summary
    pfam13865
    Location:208245
    FoP_duplication; C-terminal duplication domain of Friend of PRMT1

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    102527766..102534202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)