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ccdc6.S coiled-coil domain containing 6 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379300, updated on 4-Nov-2024

Summary

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Official Symbol
ccdc6.S
Official Full Name
coiled-coil domain containing 6 S homeolog
Primary source
Xenbase:XB-GENE-978269
Locus tag
XELAEV_18036795mg
See related
EnsemblRapid:ENSXLAG00005019633 AllianceGenome:Xenbase:XB-GENE-978269
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ccdc6
Summary
Orthologous to human CCDC6 (coiled-coil domain containing 6). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ccdc6.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (8141639..8175188, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (8171912..8205537, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 13 member C S homeolog Neighboring gene solute carrier family 16 member 9 S homeolog Neighboring gene ankyrin 3, node of Ranvier (ankyrin G) S homeolog Neighboring gene cyclin-dependent kinase 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC53501

General protein information

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Preferred Names
coiled-coil domain containing 6 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086144.1 → NP_001079613.2  coiled-coil domain containing 6 S homeolog

    Status: PROVISIONAL

    Source sequence(s)
    BC045133
    UniProtKB/TrEMBL
    A0A8J0PNS0, A0A974CC55
    Related
    ENSXLAP00005057652.1, ENSXLAT00005059006.1
    Conserved Domains (2) summary
    pfam09755
    Location:38 → 323
    DUF2046; Uncharacterized conserved protein H4 (DUF2046)
    cl00259
    Location:104 → 193
    Sm_like; Sm and related proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    8141639..8175188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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