U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

b4galnt1.L beta-1,4-N-acetyl-galactosaminyl transferase 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379299, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
b4galnt1.L
Official Full Name
beta-1,4-N-acetyl-galactosaminyl transferase 1 L homeolog
Primary source
Xenbase:XB-GENE-960515
Locus tag
XELAEV_18013451mg
See related
EnsemblRapid:ENSXLAG00005005149 AllianceGenome:Xenbase:XB-GENE-960515
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
b4galnt1
Summary
Predicted to enable acetylgalactosaminyltransferase activity. Predicted to act upstream of or within ganglioside biosynthetic process and lipid glycosylation. Predicted to be located in Golgi membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 26. Orthologous to human B4GALNT1 (beta-1,4-N-acetyl-galactosaminyltransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See b4galnt1.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (148568003..148693273, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (142725579..142761941, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene Sp5 transcription factor-like L homeolog Neighboring gene solute carrier family 26 member 10 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene osteosarcoma amplified 9, endoplasmic reticulum lectin L homeolog Neighboring gene provisional ortholog of core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC53523

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
beta-1,4-N-acetyl-galactosaminyl transferase 1 L homeolog
NP_001079612.1
XP_018100249.1
XP_041436768.1
XP_041436769.1
XP_041436770.1
XP_041436771.1
XP_041436772.1
XP_041436773.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086143.1 → NP_001079612.1  beta-1,4-N-acetyl-galactosaminyl transferase 1 L homeolog

    See identical proteins and their annotated locations for NP_001079612.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045131
    UniProtKB/TrEMBL
    A0A974HZ74, Q7ZX76
    Related
    ENSXLAP00005015207.1, ENSXLAT00005015482.1
    Conserved Domains (1) summary
    cl11394
    Location:275 → 398
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    148568003..148693273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041580838.1 → XP_041436772.1  beta-1,4-N-acetyl-galactosaminyl transferase 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A974HZ74, Q7ZX76
    Conserved Domains (1) summary
    cl11394
    Location:275 → 398
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_041580836.1 → XP_041436770.1  beta-1,4-N-acetyl-galactosaminyl transferase 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A974HZ74, Q7ZX76
    Conserved Domains (1) summary
    cl11394
    Location:275 → 398
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_041580834.1 → XP_041436768.1  beta-1,4-N-acetyl-galactosaminyl transferase 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1M4Z6, A0A974HZ74
    Conserved Domains (1) summary
    cd00761
    Location:308 → 401
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_041580837.1 → XP_041436771.1  beta-1,4-N-acetyl-galactosaminyl transferase 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A974HZ74, Q7ZX76
    Conserved Domains (1) summary
    cl11394
    Location:275 → 398
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_041580839.1 → XP_041436773.1  beta-1,4-N-acetyl-galactosaminyl transferase 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A974HZ74, Q7ZX76
    Conserved Domains (1) summary
    cl11394
    Location:275 → 398
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  6. XM_018244760.2 → XP_018100249.1  beta-1,4-N-acetyl-galactosaminyl transferase 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A974HZ74, Q7ZX76
    Related
    ENSXLAP00005015200.1, ENSXLAT00005015473.1
    Conserved Domains (1) summary
    cl11394
    Location:275 → 398
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  7. XM_041580835.1 → XP_041436769.1  beta-1,4-N-acetyl-galactosaminyl transferase 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A974HZ74, Q7ZX76
    Conserved Domains (1) summary
    cl11394
    Location:275 → 398
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.