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hnrnpdl.L heterogeneous nuclear ribonucleoprotein D like L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379296, updated on 4-Nov-2024

Summary

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Official Symbol
hnrnpdl.L
Official Full Name
heterogeneous nuclear ribonucleoprotein D like L homeolog
Primary source
Xenbase:XB-GENE-866408
Locus tag
XELAEV_18005920mg
See related
EnsemblRapid:ENSXLAG00005031503 AllianceGenome:Xenbase:XB-GENE-866408
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
hnRNP; jktbp; hnrpdl; jktbp2; laauf1; hnrnpdl; hnrpdl-a; hnrnpdl-a
Summary
Predicted to enable DNA binding activity; poly(A) binding activity; and poly(G) binding activity. Predicted to act upstream of or within regulation of gene expression. Predicted to be located in cytoplasm and nucleoplasm. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 3. Orthologous to human HNRNPDL (heterogeneous nuclear ribonucleoprotein D like). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See hnrnpdl.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (90741319..90746740)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (79850817..79856038)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 150C L homeolog Neighboring gene uncharacterized LOC121403662 Neighboring gene heterogeneous nuclear ribonucleoprotein D L homeolog Neighboring gene RasGEF domain family member 1B L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nishiyama A, et al. Nat Commun, 2020 Mar 6. PMID 32144273, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC53310

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
  
enables poly(G) binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein D-like-A
Names
heterogeneous nuclear ribonucleoprotein D-like
hnRNP D-like A
hnRNP DL-A
hnRPD-like protein A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086140.1 → NP_001079609.1  heterogeneous nuclear ribonucleoprotein D-like-A

    See identical proteins and their annotated locations for NP_001079609.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045124
    UniProtKB/Swiss-Prot
    Q7ZX83
    UniProtKB/TrEMBL
    A0A974DYA7
    Related
    ENSXLAP00005094379.1, ENSXLAT00005096081.1
    Conserved Domains (2) summary
    cd12758
    Location:27 → 102
    RRM1_hnRPDL; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein D-like (hnRNP D-like or hnRNP DL) and similar proteins
    cl17169
    Location:112 → 186
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    90741319..90746740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001935422.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7ZX83.1 GenPept UniProtKB/Swiss-Prot:Q7ZX83

Gene LinkOut

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