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edc4.L enhancer of mRNA decapping 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379239, updated on 17-Aug-2024

Summary

Official Symbol
edc4.L
Official Full Name
enhancer of mRNA decapping 4 L homeolog
Primary source
Xenbase:XB-GENE-5839889
Locus tag
XELAEV_18022378mg
See related
EnsemblRapid:ENSXLAG00005006796
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
edc4; ge-1; hedls; rcd-8
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Genomic context

Location:
chromosome: 4L
Exon count:
31
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (32994726..33101690)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (31149833..31256877)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene myb-related transcription factor, partner of profilin-like Neighboring gene THAP domain containing 11 L homeolog Neighboring gene neuritin 1 like L homeolog Neighboring gene phospholipase A2 group XV L homeolog

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC53087

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
enhancer of mRNA-decapping protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086083.1NP_001079552.1  enhancer of mRNA-decapping protein 4

    See identical proteins and their annotated locations for NP_001079552.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044263
    UniProtKB/Swiss-Prot
    Q7ZXT3
    UniProtKB/TrEMBL
    A0A974D291
    Related
    ENSXLAP00005020080.1, ENSXLAT00005020509.1
    Conserved Domains (5) summary
    pfam12938
    Location:11401261
    M_domain; M domain of GW182
    pfam16529
    Location:111436
    Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    sd00039
    Location:176215
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:168400
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl12013
    Location:9391005
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    32994726..33101690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018256430.2XP_018111919.1  enhancer of mRNA-decapping protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8J0UXL6
    Related
    ENSXLAP00005020205.1, ENSXLAT00005020661.1
  2. XM_041589131.1XP_041445065.1  enhancer of mRNA-decapping protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A8J1MVL1
    Conserved Domains (3) summary
    PRK15370
    Location:699861
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00039
    Location:202241
    7WD40; WD40 repeat [structural motif]
    pfam16529
    Location:137462
    Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
  3. XM_018256432.2XP_018111921.1  enhancer of mRNA-decapping protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8J0V2G1
    Related
    ENSXLAP00005020180.1, ENSXLAT00005020628.1