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srsf5a.L serine/arginine-rich splicing factor 5 alpha L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379230, updated on 17-Aug-2024

Summary

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Official Symbol
srsf5a.L
Official Full Name
serine/arginine-rich splicing factor 5 alpha L homeolog
Primary source
Xenbase:XB-GENE-5954765
Locus tag
XELAEV_18039959mg
See related
EnsemblRapid:ENSXLAG00005034636
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
krt5.1; krt5.1b
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Genomic context

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See srsf5a.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (101776761..101791924, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (87087443..87102832, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene NFKB inhibitor alpha L homeolog Neighboring gene major histocompatibility complex, class 1, UC alpha chain L homeolog Neighboring gene actinin alpha 1 L homeolog Neighboring gene DDB1 and CUL4 associated factor 5 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
serine/arginine-rich splicing factor 5 alpha L homeolog
Names
keratin 5, gene 1 b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086074.1 → NP_001079543.1  serine/arginine-rich splicing factor 5 alpha L homeolog

    See identical proteins and their annotated locations for NP_001079543.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044085
    UniProtKB/TrEMBL
    Q6GQZ2, Q7ZXX0
    Related
    ENSXLAP00005103589.1, ENSXLAT00005105594.1
    Conserved Domains (2) summary
    cd12337
    Location:5 → 73
    RRM1_SRSF4_like; RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    cd12600
    Location:115 → 186
    RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    101776761..101791924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041571891.1 → XP_041427825.1  serine/arginine-rich splicing factor 5 alpha L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LGL3, Q6GQZ2
    Conserved Domains (1) summary
    smart00360
    Location:5 → 69
    RRM; RNA recognition motif
Nucleotide Protein Strain
Heading Accession and Version

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