snx12.S sorting nexin 12 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: snx12.S
Official Full Name: sorting nexin 12 S homeolog
Primary source: Xenbase:XB-GENE-17344552
Locus tag: XELAEV_18041972mg
See related: EnsemblRapid:ENSXLAG00005026261
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: snx12
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Genomic context

Location:: chromosome: 8S

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8S	NC_054386.1 (49937116..49959583)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8S	NC_030739.1 (49156042..49178315)

Chromosome 8S - NC_054386.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables lipid binding	IEA Inferred from Electronic Annotation more info
enables phosphatidylinositol binding	IEA Inferred from Electronic Annotation more info
enables phosphatidylinositol-3-phosphate binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within endocytic recycling	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within late endosome to Golgi transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in early endosome membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
part_of retromer complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: sorting nexin 12 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086045.1 → NP_001079514.1 sorting nexin 12 S homeolog

See identical proteins and their annotated locations for NP_001079514.1

Status: PROVISIONAL

Source sequence(s)

BC043969

UniProtKB/TrEMBL

A0A974H5N5, Q7ZY55

Conserved Domains (1) summary

cl02563
Location:27 → 158

PX_domain; The Phox Homology domain, a phosphoinositide binding module

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

49937116..49959583

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041574068.1 → XP_041430002.1 sorting nexin 12 S homeolog isoform X1

UniProtKB/TrEMBL

A0A8J1LKE9, A0A974H5N5

Related

ENSXLAP00005078034.1, ENSXLAT00005079625.1

Conserved Domains (1) summary

cl02563
Location:50 → 189

PX_domain; The Phox Homology domain, a phosphoinositide binding module