nef1f.L neuronal intermediate filament family member 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: nef1f.L
Official Full Name: neuronal intermediate filament family member 1 L homeolog
Primary source: Xenbase:XB-GENE-876576
Locus tag: XELAEV_18018530mg
See related: EnsemblRapid:ENSXLAG00005000758
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: nif; XNIF; nifb; ina-b; nif.L; CTDSPL
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Genomic context

Location:: chromosome: 3L

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	3L	NC_054375.1 (129324417..129331449)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	3L	NC_030728.1 (113931621..113938653)

Chromosome 3L - NC_054375.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables structural constituent of cytoskeleton	IEA Inferred from Electronic Annotation more info
enables structural molecule activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within intermediate filament organization	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in intermediate filament	IDA Inferred from Direct Assay more info	PubMed
located_in intermediate filament	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: low molecular weight neuronal intermediate filament

Names: internexin neuronal intermediate filament protein, alpha; low molecular weight neuronal intermediate filament L homeolog; low molecular weight neuronal intermediate filament b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086012.1 → NP_001079481.1 low molecular weight neuronal intermediate filament

See identical proteins and their annotated locations for NP_001079481.1

Status: PROVISIONAL

Source sequence(s)

BC043782

UniProtKB/TrEMBL

A0A974DFE7, Q7ZYH6

Related

ENSXLAP00005002241.1, ENSXLAT00005002287.1

Conserved Domains (3) summary

pfam00038
Location:86 → 397

Filament; Intermediate filament protein

pfam04732
Location:7 → 85

Filament_head; Intermediate filament head (DNA binding) region

pfam07798
Location:298 → 410

DUF1640; Protein of unknown function (DUF1640)