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tnnc2.S troponin C2, fast skeletal type S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379095, updated on 17-Aug-2024

Summary

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Official Symbol
tnnc2.S
Official Full Name
troponin C2, fast skeletal type S homeolog
Primary source
Xenbase:XB-GENE-865359
Locus tag
XELAEV_18046533mg
See related
EnsemblRapid:ENSXLAG00005034857
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tnnc2
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Genomic context

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See tnnc2.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (31920212..31938793, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (26446715..26465352, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene ubiquitin conjugating enzyme E2 C S homeolog Neighboring gene RGS9-1 anchoring protein R9AP like S homeolog Neighboring gene sorting nexin family member 21 S homeolog Neighboring gene acyl-CoA thioesterase 8 S homeolog Neighboring gene zinc finger SWIM-type containing 3 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Diversity of the troponin C genes during chordate evolution. Yuasa HJ, et al. J Biochem, 1998 Jun. PMID 9604009
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53213

General protein information

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Preferred Names
troponin C2, fast skeletal type S homeolog
Names
fast skeletal troponin C alpha
troponin C type 2 (fast) S homeolog
troponin C, skeletal muscle

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085939.2 → NP_001079408.1  troponin C2, fast skeletal type S homeolog

    See identical proteins and their annotated locations for NP_001079408.1

    Status: PROVISIONAL

    Source sequence(s)
    BC099255
    UniProtKB/TrEMBL
    O12996, O12997
    Related
    ENSXLAP00005104240.1, ENSXLAT00005106258.1
    Conserved Domains (1) summary
    PTZ00184
    Location:15 → 159
    PTZ00184; calmodulin; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    31920212..31938793 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018237168.2 → XP_018092657.1  troponin C2, fast skeletal type S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974H379, O12996, Q8AUR4
    Related
    ENSXLAP00005104296.1, ENSXLAT00005106319.1
    Conserved Domains (1) summary
    PTZ00184
    Location:13 → 157
    PTZ00184; calmodulin; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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