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rps20.L ribosomal protein S20 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379094, updated on 17-Aug-2024

Summary

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Official Symbol
rps20.L
Official Full Name
ribosomal protein S20 L homeolog
Primary source
Xenbase:XB-GENE-1001347
Locus tag
XELAEV_18032031mg
See related
EnsemblRapid:ENSXLAG00005016161
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rps20
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Genomic context

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Location:
chromosome: 6L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (123533284..123548995, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (116409676..116413168, complement)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene LYN proto-oncogene, Src family tyrosine kinase L homeolog Neighboring gene provisional ortholog of kinesin family member 20A L homeolog Neighboring gene small nucleolar RNA U54 Neighboring gene traf2 and NCK-interacting protein kinase-like Neighboring gene traf2 and NCK-interacting protein kinase-like Neighboring gene MOS proto-oncogene, serine/threonine kinase L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence and 40 S subunit assembly of Xenopus laevis ribosomal protein S22. Keiper BD, et al. J Biol Chem, 1990 Nov 15. PMID 2246230
  2. Gene expression screening in Xenopus identifies molecular pathways, predicts gene function and provides a global view of embryonic patterning. Gawantka V, et al. Mech Dev, 1998 Oct. PMID 9831640
  3. Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nishiyama A, et al. Nat Commun, 2020 Mar 6. PMID 32144273, Free PMC Article
  4. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  5. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC52591

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosolic ribosome IEA
Inferred from Electronic Annotation
more info
  
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  
part_of small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein uS10; 40S ribosomal protein S20
Names
S22

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085938.1 → NP_001079407.1  small ribosomal subunit protein uS10

    See identical proteins and their annotated locations for NP_001079407.1

    Status: PROVISIONAL

    Source sequence(s)
    M34706
    UniProtKB/Swiss-Prot
    P23403, Q5D0C9
    UniProtKB/TrEMBL
    A0A1L8FZ13, A0A974CPH6
    Conserved Domains (1) summary
    cl00314
    Location:12 → 116
    Ribosomal_S10; Ribosomal protein S10p/S20e

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    123533284..123548995 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041565247.1 → XP_041421181.1  40S ribosomal protein S20 isoform X1

    UniProtKB/Swiss-Prot
    P23403, Q5D0C9
    UniProtKB/TrEMBL
    A0A1L8FZ13, A0A974CPH6
    Related
    ENSXLAP00005047554.1, ENSXLAT00005048664.1
    Conserved Domains (1) summary
    cl00314
    Location:12 → 116
    Ribosomal_S10; Ribosomal protein S10p/S20e
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P23403.1 GenPept UniProtKB/Swiss-Prot:P23403

Gene LinkOut

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