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THY1 Thy-1 cell surface antigen [ Gallus gallus (chicken) ]

Gene ID: 378897, updated on 10-Oct-2024

Summary

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Symbol
THY1provided by CGNC
Full Name
Thy-1 cell surface antigenprovided by CGNC
Primary source
CGNC:5094
See related
Ensembl:ENSGALG00010026023
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See THY1 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 24 NC_052555.1 (4228871..4233289)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 24 NC_052596.1 (4188231..4192660)

Chromosome 24 - NC_052555.1Genomic Context describing neighboring genes Neighboring gene nectin cell adhesion molecule 1 Neighboring gene uncharacterized LOC112530267 Neighboring gene uncharacterized LOC121107526 Neighboring gene microRNA 1466 Neighboring gene ubiquitin specific peptidase 2 Neighboring gene C1q and TNF related 5 Neighboring gene membrane frizzled-related protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Light activation of the phosphoinositide cycle in intrinsically photosensitive chicken retinal ganglion cells. Contín MA, et al. Invest Ophthalmol Vis Sci, 2010 Nov. PMID 20538988
  2. Expression, purification, and characterization of avian Thy-1 from Lec1 mammalian and Tn5 insect cells. Mehndiratta P, et al. Protein Expr Purif, 2004 Feb. PMID 14711516
  3. Molecular cloning and primary structure of the avian Thy-1 glycoprotein. Dowsing BJ, et al. Brain Res Mol Brain Res, 1992 Jul. PMID 1359371
  4. Cloning and functional characterization of chicken stem cell antigen 2. Mao W, et al. Dev Comp Immunol, 2010 Mar. PMID 19945479
  5. Conserved BK channel-protein interactions reveal signals relevant to cell death and survival. Sokolowski B, et al. PLoS One, 2011. PMID 22174833, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
thy-1 membrane glycoprotein
Names
Thy-1/CD90 cell surface antigen
thy-1 antigen
NP_989712.2
XP_040507952.1
XP_046788208.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204381.3 → NP_989712.2  thy-1 membrane glycoprotein precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000341
    UniProtKB/TrEMBL
    E1C6J9, Q7T252
    Related
    ENSGALP00010039188.1, ENSGALT00010063479.1
    Conserved Domains (2) summary
    smart00406
    Location:33 → 105
    IGv; Immunoglobulin V-Type
    smart00410
    Location:30 → 123
    IG_like; Immunoglobulin like

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052555.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    4228871..4233289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040652018.2 → XP_040507952.1  thy-1 membrane glycoprotein isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZZZ5, A0A8V1ACJ8
    Related
    ENSGALP00010039191.1, ENSGALT00010063483.1
    Conserved Domains (1) summary
    smart00409
    Location:48 → 141
    IG; Immunoglobulin

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052596.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    4188231..4192660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046932252.1 → XP_046788208.1  thy-1 membrane glycoprotein isoform X1

    UniProtKB/TrEMBL
    A0A8V1ACJ8
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q07212.1 GenPept UniProtKB/Swiss-Prot:Q07212

Gene LinkOut

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