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CG3253 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 37861, updated on 2-Nov-2024

Summary

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Official Symbol
CG3253provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0041706
Locus tag
Dmel_CG3253
See related
AllianceGenome:FB:FBgn0041706
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BEST:GH04269; dibeta3GnT1; Dmel\CG3253
Summary
Predicted to enable glucuronosyltransferase activity. Predicted to be involved in protein O-linked mannosylation. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A13. Orthologous to human B4GAT1 (beta-1,4-glucuronyltransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See CG3253 in Genome Data Viewer
Location:
60B10-60B11; 2-106 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (24114398..24116359)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (20001921..20003882)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene enoki mushroom Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene tamo

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A P element has induced intron formation in Drosophila. Nouaud D, et al. Mol Biol Evol, 1999 Nov. PMID 10555281
  2. Phenotype-based clustering of glycosylation-related genes by RNAi-mediated gene silencing. Yamamoto-Hino M, et al. Genes Cells, 2015 Jun. PMID 25940448, Free PMC Article
  3. Molecular and comparative genetics of mental retardation. Inlow JK, et al. Genetics, 2004 Feb. PMID 15020472, Free PMC Article
  4. Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions. Erives AJ. Dev Genes Evol, 2015 Sep. PMID 26173873, Free PMC Article
  5. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747, Free PMC Article

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables glucuronosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glucuronosyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein O-linked mannosylation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG3253-PA
CG3253-PB
L-gene
NP_001246488.1
NP_611886.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    24114398..24116359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001259559.1 → NP_001246488.1  uncharacterized protein Dmel_CG3253, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246488.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W1A7
    Conserved Domains (1) summary
    pfam13896
    Location:52 → 371
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  2. NM_138042.4 → NP_611886.1  uncharacterized protein Dmel_CG3253, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_611886.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W1A7
    Related
    FBpp0072160
    Conserved Domains (1) summary
    pfam13896
    Location:52 → 371
    Glyco_transf_49; Glycosyl-transferase for dystroglycan
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9W1A7 Q9W1A7

Gene LinkOut

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