TNFSF13B tumor necrosis factor superfamily member 13b [Gallus gallus (chicken)] - Gene

Summary

Symbol: TNFSF13Bprovided by CGNC
Full Name: tumor necrosis factor superfamily member 13bprovided by CGNC
Primary source: CGNC:12645
See related: Ensembl:ENSGALG00010013172
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 1

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	1	NC_052532.1 (140207645..140226148, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	1	NC_052573.1 (140190895..140209390, complement)

Chromosome 1 - NC_052532.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

show that in the chicken BAFF is necessary for B cell survival but in contrast to mammals, not only mature B cells but also immature B cells in the bursa of Fabricius are maintained by BAFF.
Title: Prolonged effect of BAFF on chicken B cell development revealed by RCAS retroviral gene transfer in vivo.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables receptor ligand activity	IEA Inferred from Electronic Annotation more info	PubMed
enables tumor necrosis factor receptor binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in immune response	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular space	IEA Inferred from Electronic Annotation more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: tumor necrosis factor ligand superfamily member 13B

Names: B-cell-activating factor BAFF; TNF superfamily member 13b; tumor necrosis factor (ligand) superfamily, member 13b

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001396917.1 → NP_001383846.1 tumor necrosis factor ligand superfamily member 13B isoform a

Status: VALIDATED

Source sequence(s)

JAENSK010000025

UniProtKB/TrEMBL

Q8JHJ4

Conserved Domains (1) summary

cd00184
Location:148 → 285

TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...
NM_001396918.1 → NP_001383847.1 tumor necrosis factor ligand superfamily member 13B isoform b

Status: VALIDATED

Source sequence(s)

JAENSK010000025

Conserved Domains (1) summary

cl00147
Location:148 → 252

TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...
NM_204327.3 → NP_989658.1 tumor necrosis factor ligand superfamily member 13B isoform a

See identical proteins and their annotated locations for NP_989658.1

Status: VALIDATED

Source sequence(s)

JAENSK010000025

UniProtKB/TrEMBL

Q8JHJ4

Related

ENSGALP00010018459.1, ENSGALT00010031591.1

Conserved Domains (1) summary

cd00184
Location:148 → 285

TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

140207645..140226148 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046943842.1 → XP_046799798.1 tumor necrosis factor ligand superfamily member 13B isoform X1

UniProtKB/TrEMBL

Q8JHJ4

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

140190895..140209390 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)