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JCHAIN joining chain of multimeric IgA and IgM [ Gallus gallus (chicken) ]

Gene ID: 374117, updated on 17-Aug-2024

Summary

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Official Symbol
JCHAINprovided by CGNC
Official Full Name
joining chain of multimeric IgA and IgMprovided by CGNC
Primary source
CGNC:8778
See related
Ensembl:ENSGALG00010004158
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
IGJ
Orthologs
human mouse all
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Genomic context

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See JCHAIN in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (49518277..49524056, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (49522410..49528190, complement)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532331 Neighboring gene N-acylethanolamine acid amidase Neighboring gene SDA1 domain containing 1 Neighboring gene uncharacterized LOC422643 Neighboring gene RUN and FYVE domain containing 3 Neighboring gene UTP3, small subunit processome component homolog (S. cerevisiae) Neighboring gene G-rich RNA sequence binding factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning of the chicken immunoglobulin joining (J)-chain gene and characterization of its promoter region. Takahashi T, et al. DNA Cell Biol, 2002 Feb. PMID 11953007
  2. Cloning and expression of the chicken immunoglobulin joining (J)-chain cDNA. Takahashi T, et al. Immunogenetics, 2000 Feb. PMID 10663570
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables immunoglobulin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in humoral immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of pentameric IgM immunoglobulin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
immunoglobulin J chain
Names
immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204263.2 → NP_989594.1  immunoglobulin J chain precursor

    See identical proteins and their annotated locations for NP_989594.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000074
    UniProtKB/TrEMBL
    A0A8V0XC39, E1BY93
    Related
    ENSGALP00010005696.1, ENSGALT00010009709.1
    Conserved Domains (1) summary
    pfam15097
    Location:26 → 158
    Ig_J_chain; Immunoglobulin J chain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    49518277..49524056 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    49522410..49528190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut