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SUMO1 small ubiquitin-like modifier 1 [ Gallus gallus (chicken) ]

Gene ID: 373930, updated on 12-Oct-2024

Summary

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Official Symbol
SUMO1provided by CGNC
Official Full Name
small ubiquitin-like modifier 1provided by CGNC
Primary source
CGNC:48961
See related
Ensembl:ENSGALG00010025131
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
DAP1; GMP1; PIC1; SMT3; UBL1; OFC10; SENP2; SMT3C; SMT3H3; sentrin
Orthologs
human mouse all
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Genomic context

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See SUMO1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (11381281..11392728, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (11301980..11313425, complement)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene alsin Rho guanine nucleotide exchange factor ALS2 Neighboring gene frizzled class receptor 7 Neighboring gene uncharacterized LOC101747813 Neighboring gene small nucleolar RNA SNORD70 Neighboring gene small nucleolar RNA SNORD70 Neighboring gene NOP58 ribonucleoprotein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SUMO-targeted ubiquitin ligase RNF4 plays a critical role in preventing chromosome loss. Hirota K, et al. Genes Cells, 2014 Oct. PMID 25205350
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-like protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein sumoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in PML body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ubiquitin-related modifier 1
Names
GAP modifying protein 1
SMT3 homolog 3
SMT3 suppressor of mif two 3 homolog 1
SUMO-1
ubiquitin-homology domain protein PIC1
ubiquitin-like 1 (sentrin)
ubiquitin-like protein SMT3C
ubiquitin-like protein UBL1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204135.2 → NP_989466.1  small ubiquitin-related modifier 1

    See identical proteins and their annotated locations for NP_989466.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ719470
    UniProtKB/Swiss-Prot
    Q8QGH2
    UniProtKB/TrEMBL
    A0A8V1A678
    Related
    ENSGALP00010037922.1, ENSGALT00010061337.1
    Conserved Domains (1) summary
    cd16114
    Location:21 → 96
    Ubl_SUMO1; ubiquitin-like (Ubl) domain found in small ubiquitin-related modifier 1 (SUMO-1) and similar proteins

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    11381281..11392728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    11301980..11313425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8QGH2.1 GenPept UniProtKB/Swiss-Prot:Q8QGH2

Gene LinkOut