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4833422C13Rik RIKEN cDNA 4833422C13 gene [ Mus musculus (house mouse) ]

Gene ID: 373852, updated on 22-Oct-2024

Summary

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Official Symbol
4833422C13Rikprovided by MGI
Official Full Name
RIKEN cDNA 4833422C13 geneprovided by MGI
Primary source
MGI:MGI:3603826
See related
Ensembl:ENSMUSG00000074782 AllianceGenome:MGI:3603826
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in CNS E18 (RPKM 5.3), whole brain E14.5 (RPKM 2.9) and 23 other tissues See more
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Genomic context

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See 4833422C13Rik in Genome Data Viewer
Location:
13 C3; 13 47.43 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (91849784..91889991, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (91701665..91741872, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A830009L08 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:91510584-91510802 Neighboring gene STARR-seq mESC enhancer starr_35253 Neighboring gene STARR-positive B cell enhancer mm9_chr13:91600311-91600612 Neighboring gene single-stranded DNA binding protein 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:91680694-91680899 Neighboring gene predicted gene, 41016 Neighboring gene STARR-positive B cell enhancer mm9_chr13:91775680-91775980 Neighboring gene STARR-positive B cell enhancer mm9_chr13:91776398-91776699 Neighboring gene STARR-seq mESC enhancer starr_35255 Neighboring gene predicted gene, 22778 Neighboring gene STARR-seq mESC enhancer starr_35256 Neighboring gene acyl-CoA thioesterase 12 Neighboring gene STARR-positive B cell enhancer ABC_E5409 Neighboring gene STARR-positive B cell enhancer ABC_E4085 Neighboring gene STARR-seq mESC enhancer starr_35257 Neighboring gene zinc finger, CCHC domain containing 9 Neighboring gene STARR-seq mESC enhancer starr_35258 Neighboring gene creatine kinase, mitochondrial 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Clone Names

  • C130047M12Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015501.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript.
    Source sequence(s)
    AK048302
    Related
    ENSMUST00000160385.2

  2. NR_028313.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) contains an alternate 3' exon, compared to variant 3.
    Source sequence(s)
    AK048302, AK162854, BX511976
    Related
    ENSMUST00000161491.4

  3. NR_028314.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 3' exon, compared to variant 3.
    Source sequence(s)
    AK048302, AK161222
    Related
    ENSMUST00000099331.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    91849784..91889991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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