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rgn.L regucalcin L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 373659, updated on 17-Aug-2024

Summary

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Official Symbol
rgn.L
Official Full Name
regucalcin L homeolog
Primary source
Xenbase:XB-GENE-865001
Locus tag
XELAEV_18013034mg
See related
EnsemblRapid:ENSXLAG00005011013
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
GNL; rgn-A; smp30; xsmp30
Orthologs
human mouse all
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Genomic context

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See rgn.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (119543818..119558656)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (113729232..113744133)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene RP2, ARL3 GTPase activating protein L homeolog Neighboring gene jade family PHD finger 3 L homeolog Neighboring gene phosphatidylinositol-specific phospholipase C, X domain containing 1 L homeolog Neighboring gene uncharacterized LOC108708443

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and expression pattern of a Xenopus pronephros-specific gene, XSMP-30. Sato A, et al. Mech Dev, 2000 Apr. PMID 10727865
  2. The gene of Ca2+-binding protein regucalcin is highly conserved in vertebrate species. Misawa H, et al. Int J Mol Med, 2000 Aug. PMID 10891565
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables calcium ion binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
  
enables gluconolactonase activity IEA
Inferred from Electronic Annotation
more info
  
enables gluconolactonase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within L-ascorbic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within L-ascorbic acid biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within intracellular calcium ion homeostasis ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within positive regulation of ATP-dependent activity ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within regulation of calcium-mediated signaling ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
regucalcin
Names
RC
SMP-30
gluconolactonase
rgn
senescence marker protein 30
xSMP-30
NP_001079124.1
XP_041436756.1
XP_041436757.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085655.1 → NP_001079124.1  regucalcin

    See identical proteins and their annotated locations for NP_001079124.1

    Status: PROVISIONAL

    Source sequence(s)
    AB037936
    UniProtKB/Swiss-Prot
    Q9I922, Q9IBA8
    UniProtKB/TrEMBL
    A0A974DQX9, B7ZQJ6
    Related
    ENSXLAP00005032405.1, ENSXLAT00005033191.1
    Conserved Domains (1) summary
    pfam08450
    Location:17 → 263
    SGL; SMP-30/Gluconolaconase/LRE-like region

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    119543818..119558656
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041580822.1 → XP_041436756.1  regucalcin isoform X1

    UniProtKB/Swiss-Prot
    Q9I922, Q9IBA8
    UniProtKB/TrEMBL
    A0A974DQX9, B7ZQJ6
    Conserved Domains (1) summary
    pfam08450
    Location:17 → 263
    SGL; SMP-30/Gluconolaconase/LRE-like region

  2. XM_041580823.1 → XP_041436757.1  regucalcin isoform X1

    UniProtKB/Swiss-Prot
    Q9I922, Q9IBA8
    UniProtKB/TrEMBL
    A0A974DQX9, B7ZQJ6
    Conserved Domains (1) summary
    pfam08450
    Location:17 → 263
    SGL; SMP-30/Gluconolaconase/LRE-like region
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9I922.1 GenPept UniProtKB/Swiss-Prot:Q9I922

Gene LinkOut

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Molecular Biology Databases
Research Materials