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scg3.L secretogranin III L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 373575, updated on 4-Nov-2024

Summary

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Official Symbol
scg3.L
Official Full Name
secretogranin III L homeolog
Primary source
Xenbase:XB-GENE-966939
Locus tag
XELAEV_18018209mg
See related
EnsemblRapid:ENSXLAG00005002605 AllianceGenome:Xenbase:XB-GENE-966939
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
scg3; SgIII; scg3-A
Summary
Predicted to act upstream of or within protein localization to secretory granule. Predicted to be located in extracellular region; secretory granule membrane; and transport vesicle membrane. Orthologous to human SCG3 (secretogranin III). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See scg3.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (107801961..107828465, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (92459070..92485840, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene tropomodulin 2 L homeolog Neighboring gene LysM, putative peptidoglycan-binding, domain containing 2 L homeolog Neighboring gene AP-4 complex subunit epsilon-1-like Neighboring gene TNF alpha induced protein 8 like 3 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The neuroendocrine proteins secretogranin II and III are regionally conserved and coordinately expressed with proopiomelanocortin in Xenopus intermediate pituitary. Holthuis JC, et al. J Neurochem, 1996 Jun. PMID 8632145
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within protein localization to secretory granule IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in secretory granule membrane IEA
Inferred from Electronic Annotation
more info
  
located_in transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
secretogranin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085577.1 → NP_001079046.1  secretogranin-3

    See identical proteins and their annotated locations for NP_001079046.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074331
    UniProtKB/TrEMBL
    A0A974DEN5, Q6GLW5, Q91847
    Related
    ENSXLAP00005007756.1, ENSXLAT00005007879.1
    Conserved Domains (1) summary
    pfam15467
    Location:18 → 458
    SGIII; Secretogranin-3

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    107801961..107828465 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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