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B3gntl1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 367384, updated on 2-Nov-2024

Summary

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Symbol
B3gntl1provided by RGD
Full Name
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1provided by RGD
Primary source
RGD:1359497
See related
EnsemblRapid:ENSRNOG00000049724 AllianceGenome:RGD:1359497
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
QTGAL
Summary
Enables tRNA-queuosine(34) galactosyltransferase activity. Involved in tRNA modification. Predicted to be active in cytoplasm. Orthologous to human B3GNTL1 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 64.4), Thymus (RPKM 56.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See B3gntl1 in Genome Data Viewer
Location:
10q32.3
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (107363036..107431988, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (106870237..106933723, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (110799409..110863075, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene fructosamine 3 kinase Neighboring gene tubulin folding cofactor D Neighboring gene zinc finger protein 750 Neighboring gene uncharacterized LOC134480642 Neighboring gene uncharacterized LOC134480728

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Zhao X, et al. Cell, 2023 Dec 7. PMID 37992713
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC124891

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables tRNA-queuosine(34) galactosyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables tRNA-queuosine(34) galactosyltransferase activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in regulation of translation ISO
Inferred from Sequence Orthology
more info
  
involved_in tRNA modification IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in tRNA modification ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
queuosine-tRNA galactosyltransferase; UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1
Names
BGnT-like protein 1
beta1,3-N-acetylglucosaminyltransferase-like protein 1
beta3Gn-T-like protein 1
beta3GnTL1
NP_001015035.1
XP_038942442.1
XP_038942443.1
XP_038942444.1
XP_038942446.1
XP_063125620.1
XP_063125621.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015035.1 → NP_001015035.1  queuosine-tRNA galactosyltransferase

    See identical proteins and their annotated locations for NP_001015035.1

    Status: PROVISIONAL

    Source sequence(s)
    AY634365
    UniProtKB/Swiss-Prot
    Q2NKP4, Q6GV29
    UniProtKB/TrEMBL
    A0A8I5ZS74
    Related
    ENSRNOP00000064695.2, ENSRNOT00000071141.4
    Conserved Domains (1) summary
    cd06913
    Location:18 → 236
    beta3GnTL1_like; Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    107363036..107431988 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063269550.1 → XP_063125620.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X2

  2. XM_039086516.2 → XP_038942444.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZS74
    Conserved Domains (1) summary
    cd06913
    Location:18 → 236
    beta3GnTL1_like; Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

  3. XM_039086514.2 → XP_038942442.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZS74
    Conserved Domains (1) summary
    cd06913
    Location:18 → 236
    beta3GnTL1_like; Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

  4. XM_039086515.2 → XP_038942443.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZS74
    Related
    ENSRNOP00000081528.1, ENSRNOT00000103778.2
    Conserved Domains (1) summary
    cd06913
    Location:18 → 236
    beta3GnTL1_like; Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

  5. XM_063269551.1 → XP_063125621.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q2NKP4, Q6GV29

  6. XM_039086518.2 → XP_038942446.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q2NKP4, Q6GV29
    UniProtKB/TrEMBL
    A0A8I5ZS74
    Conserved Domains (1) summary
    cd06913
    Location:18 → 236
    beta3GnTL1_like; Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

RNA

  1. XR_010055216.1 RNA Sequence

  2. XR_005489895.2 RNA Sequence

  3. XR_005489896.2 RNA Sequence

  4. XR_010055219.1 RNA Sequence

  5. XR_010055218.1 RNA Sequence

  6. XR_010055217.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GV29.1 GenPept UniProtKB/Swiss-Prot:Q6GV29

Gene LinkOut

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