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Ccdc15 coiled-coil domain containing 15 [ Rattus norvegicus (Norway rat) ]

Gene ID: 367056, updated on 17-Aug-2024

Summary

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Official Symbol
Ccdc15provided by RGD
Official Full Name
coiled-coil domain containing 15provided by RGD
Primary source
RGD:1305591
See related
EnsemblRapid:ENSRNOG00000039390 AllianceGenome:RGD:1305591
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be active in centrosome. Orthologous to human CCDC15 (coiled-coil domain containing 15). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 60.5), Testes (RPKM 48.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ccdc15 in Genome Data Viewer
Location:
8q22
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (45165297..45257641, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (36991147..37068849, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (39759077..39830235, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 218 Neighboring gene solute carrier family 37 member 2 Neighboring gene transfer RNA proline (anticodon AGG) 64 Neighboring gene uncharacterized LOC120094115 Neighboring gene hepatic and glial cell adhesion molecule Neighboring gene roundabout guidance receptor 4 Neighboring gene roundabout guidance receptor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods. Jakobsen L, et al. EMBO J, 2011 Apr 20. PMID 21399614, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in centrosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in centrosome ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 15
Names
solute carrier family 37 (glycerol-3-phosphate transporter), member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191912.2 → NP_001178841.1  coiled-coil domain-containing protein 15

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    D3ZRD2
    Related
    ENSRNOP00000109612.1, ENSRNOT00000173703.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    45165297..45257641 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006242815.5 → XP_006242877.2  coiled-coil domain-containing protein 15 isoform X1

    See identical proteins and their annotated locations for XP_006242877.2

    Conserved Domains (1) summary
    PTZ00121
    Location:594 → 708
    PTZ00121; MAEBL; Provisional

  2. XM_017596006.3 → XP_017451495.1  coiled-coil domain-containing protein 15 isoform X3

  3. XM_017596005.3 → XP_017451494.1  coiled-coil domain-containing protein 15 isoform X2

    Conserved Domains (1) summary
    PTZ00121
    Location:593 → 707
    PTZ00121; MAEBL; Provisional

  4. XM_008766078.4 → XP_008764300.1  coiled-coil domain-containing protein 15 isoform X1

    See identical proteins and their annotated locations for XP_008764300.1

    Related
    ENSRNOP00000051521.6, ENSRNOT00000040901.8
    Conserved Domains (1) summary
    PTZ00121
    Location:594 → 708
    PTZ00121; MAEBL; Provisional

  5. XM_039082303.2 → XP_038938231.1  coiled-coil domain-containing protein 15 isoform X4

    Conserved Domains (1) summary
    PTZ00121
    Location:386 → 500
    PTZ00121; MAEBL; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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