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Ttc6 tetratricopeptide repeat domain 6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 366631, updated on 17-Aug-2024

Summary

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Official Symbol
Ttc6provided by RGD
Official Full Name
tetratricopeptide repeat domain 6provided by RGD
Primary source
RGD:1560556
See related
EnsemblRapid:ENSRNOG00000022791 AllianceGenome:RGD:1560556
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1560556
Summary
Orthologous to human TTC6 (tetratricopeptide repeat domain 6). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 74.0), Lung (RPKM 13.9) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
6q23
Exon count:
37
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (80872055..81103170)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (75136827..75368176)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (78567453..78779151)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene mirror-image polydactyly 1 Neighboring gene forkhead box A1 Neighboring gene U2 spliceosomal RNA Neighboring gene ribosomal protein S6, pseudogene 8 Neighboring gene U6 spliceosomal RNA Neighboring gene lactate dehydrogenase A, pseudogene 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tetratricopeptide repeat protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432095.1 → NP_001419024.1  tetratricopeptide repeat protein 6

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000006

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    80872055..81103170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063262645.1 → XP_063118715.1  tetratricopeptide repeat protein 6 isoform X1

  2. XM_063262644.1 → XP_063118714.1  tetratricopeptide repeat protein 6 isoform X1

  3. XM_063262650.1 → XP_063118720.1  tetratricopeptide repeat protein 6 isoform X5

    Related
    ENSRNOP00000109108.1, ENSRNOT00000144757.1

  4. XM_063262647.1 → XP_063118717.1  tetratricopeptide repeat protein 6 isoform X3

  5. XM_063262652.1 → XP_063118722.1  tetratricopeptide repeat protein 6 isoform X7

  6. XM_063262646.1 → XP_063118716.1  tetratricopeptide repeat protein 6 isoform X2

  7. XM_063262648.1 → XP_063118718.1  tetratricopeptide repeat protein 6 isoform X4

    UniProtKB/TrEMBL
    A0A8I5ZWF2
    Related
    ENSRNOP00000081976.1, ENSRNOT00000098973.2

  8. XM_063262651.1 → XP_063118721.1  tetratricopeptide repeat protein 6 isoform X6

    Related
    ENSRNOP00000032088.6, ENSRNOT00000032743.8

  9. XM_039113206.2 → XP_038969134.1  tetratricopeptide repeat protein 6 isoform X11

    Conserved Domains (3) summary
    PTZ00449
    Location:387 → 463
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0457
    Location:1030 → 1311
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:970 → 998
    TPR; TPR repeat [structural motif]

  10. XM_039113209.2 → XP_038969137.1  tetratricopeptide repeat protein 6 isoform X12

    Conserved Domains (4) summary
    PTZ00449
    Location:387 → 463
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0457
    Location:878 → 1035
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    TIGR02917
    Location:894 → 1234
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:970 → 998
    TPR; TPR repeat [structural motif]

  11. XM_039113210.2 → XP_038969138.1  tetratricopeptide repeat protein 6 isoform X12

    Conserved Domains (4) summary
    PTZ00449
    Location:387 → 463
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0457
    Location:878 → 1035
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    TIGR02917
    Location:894 → 1234
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:970 → 998
    TPR; TPR repeat [structural motif]

  12. XM_039113207.2 → XP_038969135.1  tetratricopeptide repeat protein 6 isoform X12

    Conserved Domains (4) summary
    PTZ00449
    Location:387 → 463
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    COG0457
    Location:878 → 1035
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    TIGR02917
    Location:894 → 1234
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:970 → 998
    TPR; TPR repeat [structural motif]

  13. XM_063262653.1 → XP_063118723.1  tetratricopeptide repeat protein 6 isoform X8

  14. XM_063262655.1 → XP_063118725.1  tetratricopeptide repeat protein 6 isoform X10

  15. XM_063262654.1 → XP_063118724.1  tetratricopeptide repeat protein 6 isoform X9

  16. XM_063262656.1 → XP_063118726.1  tetratricopeptide repeat protein 6 isoform X10

  17. XM_063262658.1 → XP_063118728.1  tetratricopeptide repeat protein 6 isoform X14

  18. XM_063262657.1 → XP_063118727.1  tetratricopeptide repeat protein 6 isoform X13

RNA

  1. XR_005505974.2 RNA Sequence

  2. XR_005505975.2 RNA Sequence

  3. XR_005505976.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001108983.1: Suppressed sequence

    Description
    NM_001108983.1: This RefSeq was removed because the CDS was partial.
Nucleotide Protein Strain
Heading Accession and Version

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