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CAALFM_C110620WA pseudouridine synthase [ Candida albicans SC5314 ]

Gene ID: 3647682, updated on 11-Apr-2024

Summary

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Gene symbol
CAALFM_C110620WA
Gene description
pseudouridine synthase
Locus tag
CAALFM_C110620WA
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Candida albicans SC5314 (strain: SC5314, nat-host: Homo sapiens, culture-collection: ATCC:MYA-2876)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida
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Genomic context

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See CAALFM_C110620WA in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_032089.1 (2352465..2353904)

Chromosome 1 - NC_032089.1Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Fcy23p Neighboring gene uncharacterized protein Neighboring gene Pea2p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032089.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure. Muzzey D, et al. Genome Biol, 2013. PMID 24025428, Free PMC Article
  2. Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes. van het Hoog M, et al. Genome Biol, 2007. PMID 17419877, Free PMC Article
  3. The diploid genome sequence of Candida albicans. Jones T, et al. Proc Natl Acad Sci U S A, 2004 May 11. PMID 15123810, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in box H/ACA sno(s)RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pseudouridine synthase
XP_710717.1
  • Ortholog(s) have mRNA binding, pseudouridine synthase activity

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_032089.1 Reference assembly

    Range
    2352465..2353904
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_705625.1 → XP_710717.1  pseudouridine synthase [Candida albicans SC5314]

    See identical proteins and their annotated locations for XP_710717.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A0A1D8PEX8, O43101, Q59LW9
    UniProtKB/TrEMBL
    A0A8H6F042, C4YCY6
    Conserved Domains (1) summary
    cl27547
    Location:27 → 352
    TruB_N; TruB family pseudouridylate synthase (N terminal domain)
Nucleotide Protein
Heading Accession and Version

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