U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Phf7 PHD finger protein 7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 364510, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
Phf7provided by RGD
Official Full Name
PHD finger protein 7provided by RGD
Primary source
RGD:1308638
See related
EnsemblRapid:ENSRNOG00000018996 AllianceGenome:RGD:1308638
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable metal ion binding activity. Predicted to be located in several cellular components, including Golgi apparatus; cytosol; and nuclear speck. Predicted to be active in nucleus. Orthologous to human PHF7 (PHD finger protein 7). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 1989.2) and Muscle (RPKM 58.2) See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Phf7 in Genome Data Viewer
Location:
16p16
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (6439968..6452671, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (6433535..6446314, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (7323527..7336609, complement)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene troponin C1, slow skeletal and cardiac type Neighboring gene semaphorin 3G Neighboring gene BRCA1 associated deubiquitinase 1 Neighboring gene dynein, axonemal, heavy chain 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Proteomic characterization of the human sperm nucleus. de Mateo S, et al. Proteomics, 2011 Jul. PMID 21630459
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
  
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

Go to the top of the page Help
Preferred Names
PHD finger protein 7

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012211.1 → NP_001012211.1  PHD finger protein 7

    See identical proteins and their annotated locations for NP_001012211.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079288
    UniProtKB/Swiss-Prot
    Q6AXW4
    UniProtKB/TrEMBL
    A0A8I6AM33
    Related
    ENSRNOP00000079388.2, ENSRNOT00000107128.2
    Conserved Domains (2) summary
    cd15496
    Location:246 → 299
    PHD_PHF7_G2E3_like; PHD finger found in PHD finger protein 7 (PHF7) and G2/M phase-specific E3 ubiquitin-protein ligase (G2E3)
    cd15669
    Location:33 → 144
    ePHD_PHF7_G2E3_like; Extended PHD finger found in PHD finger protein 7 (PHF7) and G2/M phase-specific E3 ubiquitin-protein ligase (G2E3)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    6439968..6452671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063275583.1 → XP_063131653.1  PHD finger protein 7 isoform X3

  2. XM_006252632.5 → XP_006252694.1  PHD finger protein 7 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AM33, A0A8L2QKI0
    Related
    ENSRNOP00000040832.4, ENSRNOT00000044991.6
    Conserved Domains (2) summary
    cd15496
    Location:212 → 265
    PHD_PHF7_G2E3_like; PHD finger found in PHD finger protein 7 (PHF7) and G2/M phase-specific E3 ubiquitin-protein ligase (G2E3)
    cl22851
    Location:33 → 110
    PHD_SF; PHD finger superfamily

  3. XM_017600192.3 → XP_017455681.1  PHD finger protein 7 isoform X2

    UniProtKB/TrEMBL
    A0A8I6AM33
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6AXW4.1 GenPept UniProtKB/Swiss-Prot:Q6AXW4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools