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HDA1 histone deacetylase [ Candida albicans SC5314 ]

Gene ID: 3640154, updated on 25-Jan-2024

Summary

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Gene symbol
HDA1
Gene description
histone deacetylase
Locus tag
CAALFM_CR02050CA
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Candida albicans SC5314 (strain: SC5314, nat-host: Homo sapiens, culture-collection: ATCC:MYA-2876)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida
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Genomic context

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See HDA1 in Genome Data Viewer
Location:
chromosome: R
Exon count:
1
Sequence:
Chromosome: R; NC_032096.1 (449417..451918, complement)

Chromosome R - NC_032096.1Genomic Context describing neighboring genes Neighboring gene rRNA (cytosine-C5-)-methyltransferase Neighboring gene serine/threonine protein kinase Neighboring gene uncharacterized protein Neighboring gene Adh5p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032096.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure. Muzzey D, et al. Genome Biol, 2013. PMID 24025428, Free PMC Article
  2. Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes. van het Hoog M, et al. Genome Biol, 2007. PMID 17419877, Free PMC Article
  3. The diploid genome sequence of Candida albicans. Jones T, et al. Proc Natl Acad Sci U S A, 2004 May 11. PMID 15123810, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase
XP_718271.1
  • Histone deacetylase; inducer of filamentation; conserved deacetylation motif; regulates white-to-opaque switch frequency but not opaque-to-white switch; greater expression in white cells than opaque cells; inhibited by trichostatin-A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_032096.1 Reference assembly

    Range
    449417..451918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_713178.1 → XP_718271.1  histone deacetylase [Candida albicans SC5314]

    See identical proteins and their annotated locations for XP_718271.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A0A1D8PS43, Q5A960
    UniProtKB/TrEMBL
    C4YL37
    Conserved Domains (2) summary
    pfam09757
    Location:467 → 669
    Arb2; Arb2 domain
    cl17011
    Location:142 → 461
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
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Research Materials