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Dnajc25 DnaJ heat shock protein family (Hsp40) member C25 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362526, updated on 17-Aug-2024

Summary

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Official Symbol
Dnajc25provided by RGD
Official Full Name
DnaJ heat shock protein family (Hsp40) member C25provided by RGD
Primary source
RGD:1561488
See related
EnsemblRapid:ENSRNOG00000015340 AllianceGenome:RGD:1561488
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in protein folding. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to several human genes including DNAJC25-GNG10 (DNAJC25-GNG10 readthrough). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Liver (RPKM 95.8), Testes (RPKM 69.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Dnajc25 in Genome Data Viewer
Location:
5q24
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (78620608..78642921)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (73825565..73847878)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (76150840..76171424)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 483 Neighboring gene uncharacterized LOC134478984 Neighboring gene prostaglandin reductase 1 Neighboring gene U2 spliceosomal RNA Neighboring gene G protein subunit gamma 10 Neighboring gene shortage in chiasmata 1 Neighboring gene uncharacterized LOC134486939

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC109221

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in protein folding IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
dnaJ homolog subfamily C member 25
Names
DnaJ (Hsp40) homolog, subfamily C, member 25

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025021.1 → NP_001020192.1  dnaJ homolog subfamily C member 25 precursor

    See identical proteins and their annotated locations for NP_001020192.1

    Status: PROVISIONAL

    Source sequence(s)
    BC091296
    UniProtKB/Swiss-Prot
    Q5BJW9
    UniProtKB/TrEMBL
    F1LQT0
    Related
    ENSRNOP00000020702.5, ENSRNOT00000020702.7
    Conserved Domains (2) summary
    COG0484
    Location:47 → 118
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:48 → 118
    DnaJ; DnaJ domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    78620608..78642921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039110251.2 → XP_038966179.1  dnaJ homolog subfamily C member 25 isoform X1

    Related
    ENSRNOP00000112589.1, ENSRNOT00000155573.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5BJW9.1 GenPept UniProtKB/Swiss-Prot:Q5BJW9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
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