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Spata1 spermatogenesis associated 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362056, updated on 2-Nov-2024

Summary

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Official Symbol
Spata1provided by RGD
Official Full Name
spermatogenesis associated 1provided by RGD
Primary source
RGD:1359500
See related
EnsemblRapid:ENSRNOG00000015678 AllianceGenome:RGD:1359500
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in acrosomal vesicle. Orthologous to human SPATA1 (spermatogenesis associated 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 154.6), Thymus (RPKM 76.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Spata1 in Genome Data Viewer
Location:
2q44
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (238009403..238054855, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (235349126..235394578, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (252313293..252359798, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 777 Neighboring gene SSX family member 2 interacting protein Neighboring gene chitobiase Neighboring gene uncharacterized LOC134485993 Neighboring gene G protein subunit gamma 5 Neighboring gene ribosome production factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
NOT located_in acrosomal vesicle ISO
Inferred from Sequence Orthology
more info
  
located_in acrosomal vesicle ISO
Inferred from Sequence Orthology
more info
  
located_in acrosomal vesicle ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasmic vesicle ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
spermatogenesis-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014177.1 → NP_001014199.1  spermatogenesis-associated protein 1

    See identical proteins and their annotated locations for NP_001014199.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079224
    UniProtKB/Swiss-Prot
    Q6AY22
    UniProtKB/TrEMBL
    A6HWD8
    Related
    ENSRNOP00000021063.4, ENSRNOT00000021063.6
    Conserved Domains (1) summary
    pfam15743
    Location:280 → 428
    SPATA1_C; Spermatogenesis-associated C-terminus

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    238009403..238054855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039102734.2 → XP_038958662.1  spermatogenesis-associated protein 1 isoform X8

    UniProtKB/TrEMBL
    A6HWD8
    Conserved Domains (1) summary
    pfam15743
    Location:280 → 421
    SPATA1_C; Spermatogenesis-associated C-terminus

  2. XM_039102733.1 → XP_038958661.1  spermatogenesis-associated protein 1 isoform X6

    UniProtKB/TrEMBL
    A6HWD8
    Conserved Domains (1) summary
    pfam15743
    Location:280 → 427
    SPATA1_C; Spermatogenesis-associated C-terminus

  3. XM_039102731.2 → XP_038958659.1  spermatogenesis-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A6HWD8
    Conserved Domains (1) summary
    pfam15743
    Location:280 → 434
    SPATA1_C; Spermatogenesis-associated C-terminus

  4. XM_063282241.1 → XP_063138311.1  spermatogenesis-associated protein 1 isoform X9

  5. XM_063282240.1 → XP_063138310.1  spermatogenesis-associated protein 1 isoform X9

  6. XM_063282239.1 → XP_063138309.1  spermatogenesis-associated protein 1 isoform X9

  7. XM_063282238.1 → XP_063138308.1  spermatogenesis-associated protein 1 isoform X9

  8. XM_063282237.1 → XP_063138307.1  spermatogenesis-associated protein 1 isoform X8

  9. XM_063282235.1 → XP_063138305.1  spermatogenesis-associated protein 1 isoform X5

    UniProtKB/Swiss-Prot
    Q6AY22

  10. XM_063282234.1 → XP_063138304.1  spermatogenesis-associated protein 1 isoform X4

  11. XM_063282236.1 → XP_063138306.1  spermatogenesis-associated protein 1 isoform X7

  12. XM_063282232.1 → XP_063138302.1  spermatogenesis-associated protein 1 isoform X1

  13. XM_063282233.1 → XP_063138303.1  spermatogenesis-associated protein 1 isoform X3

    Related
    ENSRNOP00000093363.1, ENSRNOT00000095066.2

  14. XM_039102732.2 → XP_038958660.2  spermatogenesis-associated protein 1 isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6AY22.1 GenPept UniProtKB/Swiss-Prot:Q6AY22

Gene LinkOut

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